Analysis of interatomic Contacts of Structural Units in PDB entry:
3W6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W6W entry

There are 2 chains in PDB entry 3W6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 616
B
 SER 1ALA 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3W6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 31Right-handed alpha
Helix 2
2
A
36 52Right-handed alpha
Helix 3
3
A
59 66Right-handed alpha
Helix 4
4
A
98 126Right-handed alpha
Helix 5
5
A
127 129Right-handed 310
Helix 6
6
A
130 141Right-handed alpha
Helix 7
7
A
167 172Right-handed 310
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
226 230Right-handed 310
Helix 10
10
A
243 250Right-handed 310
Helix 11
11
A
253 262Right-handed alpha
Helix 12
12
A
265 270Right-handed 310
Helix 13
13
A
277 289Right-handed alpha
Helix 14
14
A
293 299Right-handed alpha
Helix 15
15
A
317 321Right-handed 310
Helix 16
16
A
323 337Right-handed alpha
Helix 17
17
A
355 358Right-handed 310
Helix 18
18
A
361 365Right-handed 310
Helix 19
19
A
366 386Right-handed alpha
Helix 20
20
A
393 398Right-handed alpha
Helix 21
21
A
421 426Right-handed 310
Helix 22
22
A
427 432Right-handed 310
Helix 23
23
A
435 440Right-handed alpha
Helix 24
24
A
443 453Right-handed alpha
Helix 25
25
A
453 461Right-handed alpha
Helix 26
26
A
541 552Right-handed alpha
Helix 27
27
A
611 615Right-handed 310
Helix 28
28
B
21 30Right-handed alpha
Helix 29
29
B
36 52Right-handed alpha
Helix 30
30
B
59 66Right-handed alpha
Helix 31
31
B
98 126Right-handed alpha
Helix 32
32
B
127 141Right-handed alpha
Helix 33
33
B
168 172Right-handed 310
Helix 34
34
B
201 205Right-handed 310
Helix 35
35
B
226 230Right-handed 310
Helix 36
36
B
243 250Right-handed 310
Helix 37
37
B
253 262Right-handed alpha
Helix 38
38
B
265 270Right-handed 310
Helix 39
39
B
277 289Right-handed alpha
Helix 40
40
B
293 299Right-handed alpha
Helix 41
41
B
317 321Right-handed 310
Helix 42
42
B
323 337Right-handed alpha
Helix 43
43
B
355 358Right-handed 310
Helix 44
44
B
361 365Right-handed 310
Helix 45
45
B
366 386Right-handed alpha
Helix 46
46
B
393 398Right-handed alpha
Helix 47
47
B
421 426Right-handed 310
Helix 48
48
B
427 432Right-handed 310
Helix 49
49
B
435 440Right-handed alpha
Helix 50
50
B
443 453Right-handed alpha
Helix 51
51
B
453 461Right-handed alpha
Helix 52
52
B
541 552Right-handed alpha
Helix 53
53
B
611 615Right-handed 310
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There are 10 sheets in PDB entry 3W6W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
186 190anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
534 540anti-parallel
Strand 3
A
466 475anti-parallel
Strand 4
A
577 584anti-parallel
Strand 5
A
600 604anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
352 353anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
416 419anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 512first strand
Strand 2
A
484 490anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
606 607parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 178first strand
Strand 2
B
186 190anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 302first strand
Strand 2
B
534 540anti-parallel
Strand 3
B
466 474anti-parallel
Strand 4
B
576 584anti-parallel
Strand 5
B
600 604anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
352 353anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 411first strand
Strand 2
B
416 419anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 512first strand
Strand 2
B
484 490anti-parallel
Strand 3
B
559 564anti-parallel
Strand 4
B
606 607parallel
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