Analysis of interatomic Contacts of Structural Units in PDB entry:
3W6X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3W6X entry

There are 6 chains in PDB entry 3W6X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	GLU 229
B	SER 5	GLU 229
C	SER 5	GLU 229
D	SER 5	MET 228
E	SER 5	GLU 229
F	SER 5	TYR 121

There are138 helices in PDB entry 3W6X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	14	Right-handed 310
Helix 2	2	A	49	53	Right-handed 310
Helix 3	3	A	54	72	Right-handed alpha
Helix 4	4	A	82	91	Right-handed alpha
Helix 5	5	A	111	115	Right-handed alpha
Helix 6	6	A	127	131	Right-handed 310
Helix 7	7	A	142	145	Right-handed 310
Helix 8	8	A	148	161	Right-handed alpha
Helix 9	9	A	162	165	Right-handed 310
Helix 10	10	A	178	188	Right-handed alpha
Helix 11	11	A	222	227	Right-handed alpha
Helix 12	12	B	6	14	Right-handed 310
Helix 13	13	B	49	53	Right-handed 310
Helix 14	14	B	54	72	Right-handed alpha
Helix 15	15	B	82	91	Right-handed alpha
Helix 16	16	B	111	115	Right-handed alpha
Helix 17	17	B	127	131	Right-handed 310
Helix 18	18	B	142	145	Right-handed 310
Helix 19	19	B	148	161	Right-handed alpha
Helix 20	20	B	162	165	Right-handed 310
Helix 21	21	B	179	184	Right-handed alpha
Helix 22	22	B	185	189	Right-handed 310
Helix 23	23	B	222	227	Right-handed alpha
Helix 24	24	C	6	14	Right-handed 310
Helix 25	25	C	49	53	Right-handed 310
Helix 26	26	C	54	72	Right-handed alpha
Helix 27	27	C	82	91	Right-handed alpha
Helix 28	28	C	111	115	Right-handed alpha
Helix 29	29	C	127	131	Right-handed 310
Helix 30	30	C	142	145	Right-handed 310
Helix 31	31	C	148	161	Right-handed alpha
Helix 32	32	C	162	165	Right-handed 310
Helix 33	33	C	179	184	Right-handed alpha
Helix 34	34	C	222	227	Right-handed alpha
Helix 35	35	D	6	14	Right-handed 310
Helix 36	36	D	49	53	Right-handed 310
Helix 37	37	D	54	72	Right-handed alpha
Helix 38	38	D	82	91	Right-handed alpha
Helix 39	39	D	111	115	Right-handed alpha
Helix 40	40	D	127	131	Right-handed 310
Helix 41	41	D	142	145	Right-handed 310
Helix 42	42	D	148	161	Right-handed alpha
Helix 43	43	D	162	165	Right-handed 310
Helix 44	44	D	182	188	Right-handed alpha
Helix 45	45	D	222	227	Right-handed alpha
Helix 46	46	E	6	14	Right-handed 310
Helix 47	47	E	49	53	Right-handed 310
Helix 48	48	E	54	72	Right-handed alpha
Helix 49	49	E	82	91	Right-handed alpha
Helix 50	50	E	111	115	Right-handed alpha
Helix 51	51	E	127	131	Right-handed 310
Helix 52	52	E	142	145	Right-handed 310
Helix 53	53	E	148	161	Right-handed alpha
Helix 54	54	E	162	165	Right-handed 310
Helix 55	55	E	179	184	Right-handed alpha
Helix 56	56	E	222	227	Right-handed alpha
Helix 57	57	F	6	14	Right-handed 310
Helix 58	58	F	49	53	Right-handed 310
Helix 59	59	F	54	72	Right-handed alpha
Helix 60	60	F	82	91	Right-handed alpha
Helix 61	61	F	111	115	Right-handed alpha
Helix 62	62	F	127	131	Right-handed 310
Helix 63	63	F	142	145	Right-handed 310
Helix 64	64	F	148	161	Right-handed alpha
Helix 65	65	F	162	165	Right-handed 310
Helix 66	66	F	179	184	Right-handed alpha
Helix 67	67	F	222	227	Right-handed alpha
Helix 68	68	G	6	14	Right-handed 310
Helix 69	69	G	49	53	Right-handed 310
Helix 70	70	G	54	72	Right-handed alpha
Helix 71	71	G	82	91	Right-handed alpha
Helix 72	72	G	111	115	Right-handed alpha
Helix 73	73	G	127	131	Right-handed 310
Helix 74	74	G	142	145	Right-handed 310
Helix 75	75	G	148	161	Right-handed alpha
Helix 76	76	G	162	165	Right-handed 310
Helix 77	77	G	179	184	Right-handed alpha
Helix 78	78	G	185	189	Right-handed 310
Helix 79	79	G	222	227	Right-handed alpha
Helix 80	80	H	6	14	Right-handed 310
Helix 81	81	H	49	53	Right-handed 310
Helix 82	82	H	54	72	Right-handed alpha
Helix 83	83	H	82	91	Right-handed alpha
Helix 84	84	H	111	115	Right-handed alpha
Helix 85	85	H	127	131	Right-handed 310
Helix 86	86	H	142	145	Right-handed 310
Helix 87	87	H	148	161	Right-handed alpha
Helix 88	88	H	162	165	Right-handed 310
Helix 89	89	H	179	184	Right-handed alpha
Helix 90	90	H	185	189	Right-handed 310
Helix 91	91	H	222	227	Right-handed alpha
Helix 92	92	I	6	14	Right-handed 310
Helix 93	93	I	49	53	Right-handed 310
Helix 94	94	I	54	72	Right-handed alpha
Helix 95	95	I	82	91	Right-handed alpha
Helix 96	96	I	111	115	Right-handed alpha
Helix 97	97	I	127	131	Right-handed 310
Helix 98	98	I	142	145	Right-handed 310
Helix 99	99	I	148	161	Right-handed alpha
Helix 100	100	I	162	165	Right-handed 310
Helix 101	101	I	178	188	Right-handed alpha
Helix 102	102	I	222	227	Right-handed alpha
Helix 103	103	J	6	14	Right-handed 310
Helix 104	104	J	49	53	Right-handed 310
Helix 105	105	J	54	72	Right-handed alpha
Helix 106	106	J	82	91	Right-handed alpha
Helix 107	107	J	111	115	Right-handed alpha
Helix 108	108	J	127	131	Right-handed 310
Helix 109	109	J	142	145	Right-handed 310
Helix 110	110	J	148	161	Right-handed alpha
Helix 111	111	J	162	165	Right-handed 310
Helix 112	112	J	179	184	Right-handed alpha
Helix 113	113	J	185	189	Right-handed 310
Helix 114	114	J	222	227	Right-handed alpha
Helix 115	115	K	6	14	Right-handed 310
Helix 116	116	K	49	53	Right-handed 310
Helix 117	117	K	54	72	Right-handed alpha
Helix 118	118	K	82	91	Right-handed alpha
Helix 119	119	K	111	115	Right-handed alpha
Helix 120	120	K	127	131	Right-handed 310
Helix 121	121	K	142	145	Right-handed 310
Helix 122	122	K	148	161	Right-handed alpha
Helix 123	123	K	162	165	Right-handed 310
Helix 124	124	K	179	184	Right-handed alpha
Helix 125	125	K	185	189	Right-handed 310
Helix 126	126	K	222	227	Right-handed alpha
Helix 127	127	L	6	14	Right-handed 310
Helix 128	128	L	49	53	Right-handed 310
Helix 129	129	L	54	72	Right-handed alpha
Helix 130	130	L	82	91	Right-handed alpha
Helix 131	131	L	111	115	Right-handed alpha
Helix 132	132	L	127	131	Right-handed 310
Helix 133	133	L	142	145	Right-handed 310
Helix 134	134	L	148	161	Right-handed alpha
Helix 135	135	L	162	165	Right-handed 310
Helix 136	136	L	179	184	Right-handed alpha
Helix 137	137	L	185	189	Right-handed 310
Helix 138	138	L	222	227	Right-handed alpha

There are 12 sheets in PDB entry 3W6X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	41	47	anti-parallel
Strand 3	A	94	99	anti-parallel
Strand 4	A	116	124	anti-parallel
Strand 5	A	133	140	anti-parallel
Strand 6	A	168	175	parallel
Strand 7	A	209	217	anti-parallel
Strand 8	A	191	200	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	41	47	anti-parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	116	124	anti-parallel
Strand 5	B	133	140	anti-parallel
Strand 6	B	168	175	parallel
Strand 7	B	209	217	anti-parallel
Strand 8	B	191	200	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	41	47	anti-parallel
Strand 3	C	94	99	anti-parallel
Strand 4	C	116	124	anti-parallel
Strand 5	C	133	140	anti-parallel
Strand 6	C	168	175	parallel
Strand 7	C	209	217	anti-parallel
Strand 8	C	191	200	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	41	47	anti-parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	116	124	anti-parallel
Strand 5	D	133	140	anti-parallel
Strand 6	D	168	175	parallel
Strand 7	D	209	217	anti-parallel
Strand 8	D	191	200	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	41	47	anti-parallel
Strand 3	E	94	99	anti-parallel
Strand 4	E	116	124	anti-parallel
Strand 5	E	133	140	anti-parallel
Strand 6	E	168	175	parallel
Strand 7	E	209	217	anti-parallel
Strand 8	E	191	200	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	34	first strand
Strand 2	F	41	47	anti-parallel
Strand 3	F	94	99	anti-parallel
Strand 4	F	116	124	anti-parallel
Strand 5	F	133	140	anti-parallel
Strand 6	F	168	175	parallel
Strand 7	F	209	217	anti-parallel
Strand 8	F	191	200	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	34	first strand
Strand 2	G	41	47	anti-parallel
Strand 3	G	94	99	anti-parallel
Strand 4	G	116	124	anti-parallel
Strand 5	G	133	140	anti-parallel
Strand 6	G	168	175	parallel
Strand 7	G	209	217	anti-parallel
Strand 8	G	191	200	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	34	first strand
Strand 2	H	41	47	anti-parallel
Strand 3	H	94	99	anti-parallel
Strand 4	H	116	124	anti-parallel
Strand 5	H	133	140	anti-parallel
Strand 6	H	168	175	parallel
Strand 7	H	209	217	anti-parallel
Strand 8	H	191	200	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	34	first strand
Strand 2	I	41	47	anti-parallel
Strand 3	I	94	99	anti-parallel
Strand 4	I	116	124	anti-parallel
Strand 5	I	133	140	anti-parallel
Strand 6	I	168	175	parallel
Strand 7	I	209	217	anti-parallel
Strand 8	I	191	200	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	34	first strand
Strand 2	J	41	47	anti-parallel
Strand 3	J	94	99	anti-parallel
Strand 4	J	116	124	anti-parallel
Strand 5	J	133	140	anti-parallel
Strand 6	J	168	175	parallel
Strand 7	J	209	217	anti-parallel
Strand 8	J	191	200	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	34	first strand
Strand 2	K	41	47	anti-parallel
Strand 3	K	94	99	anti-parallel
Strand 4	K	116	124	anti-parallel
Strand 5	K	133	140	anti-parallel
Strand 6	K	168	175	parallel
Strand 7	K	209	217	anti-parallel
Strand 8	K	191	200	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	34	first strand
Strand 2	L	41	47	anti-parallel
Strand 3	L	94	99	anti-parallel
Strand 4	L	116	124	anti-parallel
Strand 5	L	133	140	anti-parallel
Strand 6	L	168	175	parallel
Strand 7	L	209	217	anti-parallel
Strand 8	L	191	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3W6X

Analysis of interatomic Contacts of Structural Units in PDB entry:
3W6X