Analysis of interatomic Contacts of Structural Units in PDB entry:
3W82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W82 entry

There are 2 chains in PDB entry 3W82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27PRO 642
B
 GLU 27PRO 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3W82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 59Right-handed 310
Helix 2
2
A
60 66Right-handed alpha
Helix 3
3
A
67 79Right-handed alpha
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
92 96Right-handed 310
Helix 6
6
A
111 124Right-handed alpha
Helix 7
7
A
145 168Right-handed alpha
Helix 8
8
A
168 173Right-handed alpha
Helix 9
9
A
182 186Right-handed 310
Helix 10
10
A
194 213Right-handed alpha
Helix 11
11
A
231 244Right-handed alpha
Helix 12
12
A
269 287Right-handed alpha
Helix 13
13
A
288 293Right-handed 310
Helix 14
14
A
310 314Right-handed 310
Helix 15
15
A
315 333Right-handed alpha
Helix 16
16
A
384 394Right-handed alpha
Helix 17
17
A
482 490Right-handed alpha
Helix 18
18
A
497 506Right-handed alpha
Helix 19
19
B
57 59Right-handed 310
Helix 20
20
B
60 66Right-handed alpha
Helix 21
21
B
67 79Right-handed alpha
Helix 22
22
B
80 84Right-handed 310
Helix 23
23
B
92 96Right-handed 310
Helix 24
24
B
111 124Right-handed alpha
Helix 25
25
B
145 168Right-handed alpha
Helix 26
26
B
168 173Right-handed alpha
Helix 27
27
B
182 186Right-handed 310
Helix 28
28
B
194 213Right-handed alpha
Helix 29
29
B
231 243Right-handed alpha
Helix 30
30
B
268 287Right-handed alpha
Helix 31
31
B
288 291Right-handed 310
Helix 32
32
B
310 314Right-handed 310
Helix 33
33
B
315 334Right-handed alpha
Helix 34
34
B
384 394Right-handed alpha
Helix 35
35
B
482 490Right-handed alpha
Helix 36
36
B
497 506Right-handed alpha
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There are 14 sheets in PDB entry 3W82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 42first strand
Strand 2
A
399 407anti-parallel
Strand 3
A
410 412anti-parallel
Strand 4
A
418 425anti-parallel
Strand 5
A
435 442anti-parallel
Strand 6
A
453 461parallel
Strand 7
A
470 477first strand
Strand 8
A
511 512anti-parallel
Strand 9
A
516 517anti-parallel
Strand 10
A
524 526anti-parallel
Strand 11
A
529 531anti-parallel
Strand 12
A
534 541anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
87 90parallel
Strand 3
A
127 130parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
108 110anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
218 223parallel
Strand 3
A
258 261parallel
Strand 4
A
295 297parallel
Strand 5
A
343 346parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 371first strand
Strand 2
A
378 383anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 560first strand
Strand 2
A
563 569anti-parallel
Strand 3
A
604 607anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
578 587anti-parallel
Strand 3
A
616 624anti-parallel
Strand 4
A
636 638anti-parallel
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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 42first strand
Strand 2
B
399 407anti-parallel
Strand 3
B
410 412anti-parallel
Strand 4
B
418 425anti-parallel
Strand 5
B
435 442anti-parallel
Strand 6
B
449 461parallel
Strand 7
B
470 477first strand
Strand 8
B
511 512anti-parallel
Strand 9
B
516 517anti-parallel
Strand 10
B
524 526anti-parallel
Strand 11
B
529 532anti-parallel
Strand 12
B
534 541anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
87 90parallel
Strand 3
B
127 129parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
108 110anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
217 223parallel
Strand 3
B
258 261parallel
Strand 4
B
295 297parallel
Strand 5
B
343 346parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 371first strand
Strand 2
B
378 383anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 560first strand
Strand 2
B
563 569anti-parallel
Strand 3
B
604 607anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
593 594first strand
Strand 2
B
578 587anti-parallel
Strand 3
B
616 624anti-parallel
Strand 4
B
636 638anti-parallel
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