Analysis of interatomic Contacts of Structural Units in PDB entry:
3W8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W8X entry

There are 2 chains in PDB entry 3W8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2SER 462
B
 GLN 2SER 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 3W8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
53 68Right-handed alpha
Helix 4
4
A
116 126Right-handed alpha
Helix 5
5
A
140 148Right-handed alpha
Helix 6
6
A
153 158Right-handed alpha
Helix 7
7
A
159 162Right-handed 310
Helix 8
8
A
184 192Right-handed alpha
Helix 9
9
A
194 199Right-handed 310
Helix 10
10
A
225 238Right-handed alpha
Helix 11
11
A
260 264Right-handed 310
Helix 12
12
A
278 290Right-handed alpha
Helix 13
13
A
304 312Right-handed alpha
Helix 14
14
A
333 346Right-handed alpha
Helix 15
15
A
361 366Right-handed alpha
Helix 16
16
A
367 371Right-handed 310
Helix 17
17
A
390 392Right-handed 310
Helix 18
18
A
393 409Right-handed alpha
Helix 19
19
A
416 420Right-handed 310
Helix 20
20
A
424 426Right-handed 310
Helix 21
21
A
427 433Right-handed alpha
Helix 22
22
A
433 448Right-handed alpha
Helix 23
23
B
7 18Right-handed alpha
Helix 24
24
B
29 34Right-handed alpha
Helix 25
25
B
53 68Right-handed alpha
Helix 26
26
B
116 126Right-handed alpha
Helix 27
27
B
140 148Right-handed alpha
Helix 28
28
B
153 158Right-handed alpha
Helix 29
29
B
159 162Right-handed 310
Helix 30
30
B
184 192Right-handed alpha
Helix 31
31
B
194 199Right-handed 310
Helix 32
32
B
225 239Right-handed alpha
Helix 33
33
B
260 264Right-handed 310
Helix 34
34
B
278 291Right-handed alpha
Helix 35
35
B
304 312Right-handed alpha
Helix 36
36
B
333 346Right-handed alpha
Helix 37
37
B
361 366Right-handed alpha
Helix 38
38
B
367 371Right-handed 310
Helix 39
39
B
390 392Right-handed 310
Helix 40
40
B
393 409Right-handed alpha
Helix 41
41
B
410 412Right-handed 310
Helix 42
42
B
416 420Right-handed 310
Helix 43
43
B
424 426Right-handed 310
Helix 44
44
B
427 433Right-handed alpha
Helix 45
45
B
433 448Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3W8X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
90 93parallel
Strand 4
A
71 74parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
108 112anti-parallel
Strand 3
A
200 207anti-parallel
Strand 4
A
164 170anti-parallel
Strand 5
A
176 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 303first strand
Strand 2
A
214 222anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
244 252anti-parallel
Strand 5
A
353 358anti-parallel
Strand 6
A
380 388anti-parallel
Strand 7
A
321 329anti-parallel
Strand 8
A
412 413anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
47 50anti-parallel
Strand 3
B
90 93parallel
Strand 4
B
71 74parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 103first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
200 207anti-parallel
Strand 4
B
164 170anti-parallel
Strand 5
B
176 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 303first strand
Strand 2
B
214 222anti-parallel
Strand 3
B
267 275anti-parallel
Strand 4
B
244 252anti-parallel
Strand 5
B
353 358anti-parallel
Strand 6
B
380 388anti-parallel
Strand 7
B
321 329anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il