Analysis of interatomic Contacts of Structural Units in PDB entry:
3W94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W94 entry

There are 2 chains in PDB entry 3W94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 795ARG 1027
B
 VAL 795ARG 1027
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3W94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
834 839Right-handed alpha
Helix 2
2
A
844 846Right-handed 310
Helix 3
3
A
856 860Right-handed 310
Helix 4
4
A
948 956Right-handed alpha
Helix 5
5
A
1018 1026Right-handed alpha
Helix 6
6
B
834 839Right-handed alpha
Helix 7
7
B
844 846Right-handed 310
Helix 8
8
B
948 956Right-handed alpha
Helix 9
9
B
1018 1026Right-handed alpha
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There are 6 sheets in PDB entry 3W94. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 800first strand
Strand 2
A
940 947anti-parallel
Strand 3
A
920 925anti-parallel
Strand 4
A
982 987anti-parallel
Strand 5
A
990 999anti-parallel
Strand 6
A
907 908parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 800first strand
Strand 2
A
940 947anti-parallel
Strand 3
A
964 967anti-parallel
Strand 4
A
1010 1014anti-parallel
Strand 5
A
990 999anti-parallel
Strand 6
A
907 908parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 868first strand
Strand 2
A
848 852anti-parallel
Strand 3
A
809 814anti-parallel
Strand 4
A
818 825anti-parallel
Strand 5
A
830 833anti-parallel
Strand 6
A
889 893anti-parallel
Strand 7
A
870 875anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 800first strand
Strand 2
B
940 945anti-parallel
Strand 3
B
920 925anti-parallel
Strand 4
B
982 987anti-parallel
Strand 5
B
990 999anti-parallel
Strand 6
B
907 908parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 800first strand
Strand 2
B
940 945anti-parallel
Strand 3
B
920 925anti-parallel
Strand 4
B
982 987anti-parallel
Strand 5
B
990 999anti-parallel
Strand 6
B
1010 1014anti-parallel
Strand 7
B
964 967anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
866 868first strand
Strand 2
B
848 852anti-parallel
Strand 3
B
809 814anti-parallel
Strand 4
B
818 825anti-parallel
Strand 5
B
830 833anti-parallel
Strand 6
B
889 893anti-parallel
Strand 7
B
870 875anti-parallel
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