Analysis of interatomic Contacts of Structural Units in PDB entry:
3W9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W9V entry

There are 2 chains in PDB entry 3W9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1GLN 376
B
 ASP 1GLN 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3W9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
65 76Right-handed alpha
Helix 5
5
A
76 81Right-handed alpha
Helix 6
6
A
108 118Right-handed alpha
Helix 7
7
A
122 126Right-handed 310
Helix 8
8
A
144 158Right-handed alpha
Helix 9
9
A
170 174Right-handed 310
Helix 10
10
A
189 200Right-handed alpha
Helix 11
11
A
219 225Right-handed 310
Helix 12
12
A
248 251Right-handed 310
Helix 13
13
A
252 258Right-handed alpha
Helix 14
14
A
263 267Right-handed 310
Helix 15
15
A
269 274Right-handed 310
Helix 16
16
A
309 324Right-handed alpha
Helix 17
17
A
330 337Right-handed alpha
Helix 18
18
A
343 355Right-handed alpha
Helix 19
19
B
10 15Right-handed alpha
Helix 20
20
B
31 42Right-handed alpha
Helix 21
21
B
43 47Right-handed 310
Helix 22
22
B
65 76Right-handed alpha
Helix 23
23
B
76 81Right-handed alpha
Helix 24
24
B
108 118Right-handed alpha
Helix 25
25
B
122 126Right-handed 310
Helix 26
26
B
144 158Right-handed alpha
Helix 27
27
B
170 174Right-handed 310
Helix 28
28
B
189 199Right-handed alpha
Helix 29
29
B
220 225Right-handed 310
Helix 30
30
B
248 251Right-handed 310
Helix 31
31
B
252 258Right-handed alpha
Helix 32
32
B
263 267Right-handed 310
Helix 33
33
B
269 274Right-handed 310
Helix 34
34
B
309 324Right-handed alpha
Helix 35
35
B
330 337Right-handed alpha
Helix 36
36
B
343 355Right-handed alpha
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There are 10 sheets in PDB entry 3W9V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
4 6parallel
Strand 3
A
57 60parallel
Strand 4
A
296 304anti-parallel
Strand 5
A
83 92anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
231 232parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
136 140parallel
Strand 3
A
207 208parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
240 242anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
286 287parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
4 6parallel
Strand 3
B
57 60parallel
Strand 4
B
296 304anti-parallel
Strand 5
B
83 92anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
231 232parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
136 140parallel
Strand 3
B
207 208parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
240 242anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
286 287parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il