Analysis of interatomic Contacts of Structural Units in PDB entry:
3WA0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WA0 entry

There are 11 chains in PDB entry 3WA0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 24	LYS 312
B	THR 23	LYS 312
C	THR 21	ALA 313
D	PRO 19	ALA 313
E	THR 21	LYS 312
F	THR 21	ARG 311
G	ASP 1478	THR 1488
H	LEU 1496	GLU 1506
I	UNK 1	UNK 7
J	UNK 1	UNK 8
K	UNK 1	UNK 6

There are 56 helices in PDB entry 3WA0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	42	55	Right-handed alpha
Helix 2	2	A	80	84	Right-handed 310
Helix 3	3	A	104	109	Right-handed alpha
Helix 4	4	A	111	128	Right-handed alpha
Helix 5	5	A	134	151	Right-handed alpha
Helix 6	6	A	170	176	Right-handed alpha
Helix 7	7	A	180	194	Right-handed alpha
Helix 8	8	A	199	212	Right-handed alpha
Helix 9	9	A	289	311	Right-handed alpha
Helix 10	10	B	42	55	Right-handed alpha
Helix 11	11	B	80	84	Right-handed 310
Helix 12	12	B	104	109	Right-handed alpha
Helix 13	13	B	111	128	Right-handed alpha
Helix 14	14	B	134	151	Right-handed alpha
Helix 15	15	B	170	177	Right-handed alpha
Helix 16	16	B	180	195	Right-handed alpha
Helix 17	17	B	199	212	Right-handed alpha
Helix 18	18	B	289	312	Right-handed alpha
Helix 19	19	C	42	55	Right-handed alpha
Helix 20	20	C	80	84	Right-handed 310
Helix 21	21	C	104	109	Right-handed alpha
Helix 22	22	C	111	128	Right-handed alpha
Helix 23	23	C	134	151	Right-handed alpha
Helix 24	24	C	170	176	Right-handed alpha
Helix 25	25	C	180	193	Right-handed alpha
Helix 26	26	C	194	196	Right-handed 310
Helix 27	27	C	199	212	Right-handed alpha
Helix 28	28	C	289	311	Right-handed alpha
Helix 29	29	D	42	55	Right-handed alpha
Helix 30	30	D	80	84	Right-handed 310
Helix 31	31	D	104	109	Right-handed alpha
Helix 32	32	D	111	128	Right-handed alpha
Helix 33	33	D	134	151	Right-handed alpha
Helix 34	34	D	170	175	Right-handed alpha
Helix 35	35	D	180	193	Right-handed alpha
Helix 36	36	D	194	196	Right-handed 310
Helix 37	37	D	199	212	Right-handed alpha
Helix 38	38	D	289	313	Right-handed alpha
Helix 39	39	E	42	55	Right-handed alpha
Helix 40	40	E	80	84	Right-handed 310
Helix 41	41	E	104	109	Right-handed alpha
Helix 42	42	E	111	128	Right-handed alpha
Helix 43	43	E	134	151	Right-handed alpha
Helix 44	44	E	170	175	Right-handed alpha
Helix 45	45	E	180	194	Right-handed alpha
Helix 46	46	E	199	212	Right-handed alpha
Helix 47	47	E	289	311	Right-handed alpha
Helix 48	48	F	42	55	Right-handed alpha
Helix 49	49	F	104	109	Right-handed alpha
Helix 50	50	F	111	128	Right-handed alpha
Helix 51	51	F	134	151	Right-handed alpha
Helix 52	52	F	170	175	Right-handed alpha
Helix 53	53	F	180	193	Right-handed alpha
Helix 54	54	F	194	196	Right-handed 310
Helix 55	55	F	199	212	Right-handed alpha
Helix 56	56	F	289	311	Right-handed alpha

There are 17 sheets in PDB entry 3WA0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	25	27	anti-parallel
Strand 3	A	93	98	parallel
Strand 4	A	62	68	anti-parallel
Strand 5	A	71	74	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	240	244	anti-parallel
Strand 3	A	231	237	anti-parallel
Strand 4	A	220	226	anti-parallel
Strand 5	A	283	286	anti-parallel
Strand 6	A	270	275	anti-parallel
Strand 7	A	261	267	anti-parallel
Strand 8	G	1481	1484	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	24	27	anti-parallel
Strand 3	B	92	98	parallel
Strand 4	B	62	68	anti-parallel
Strand 5	B	71	74	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	231	237	anti-parallel
Strand 3	B	240	244	anti-parallel
Strand 4	B	254	257	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	261	267	anti-parallel
Strand 4	H	1500	1503	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	22	27	anti-parallel
Strand 3	C	92	98	parallel
Strand 4	C	62	68	anti-parallel
Strand 5	C	71	74	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	225	first strand
Strand 2	C	231	236	anti-parallel
Strand 3	C	240	244	anti-parallel
Strand 4	C	254	257	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	286	first strand
Strand 2	C	270	275	anti-parallel
Strand 3	C	261	267	anti-parallel
Strand 4	I	3	5	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	38	first strand
Strand 2	D	21	27	anti-parallel
Strand 3	D	92	98	parallel
Strand 4	D	62	68	anti-parallel
Strand 5	D	71	74	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	225	first strand
Strand 2	D	231	237	anti-parallel
Strand 3	D	240	244	anti-parallel
Strand 4	D	254	257	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	267	first strand
Strand 2	D	270	275	anti-parallel
Strand 3	D	283	286	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	22	27	anti-parallel
Strand 3	E	92	98	parallel
Strand 4	E	62	67	anti-parallel
Strand 5	E	72	74	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	225	first strand
Strand 2	E	231	237	anti-parallel
Strand 3	E	240	244	anti-parallel
Strand 4	E	254	257	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	271	275	anti-parallel
Strand 3	E	261	266	anti-parallel
Strand 4	J	4	7	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	37	first strand
Strand 2	F	22	27	anti-parallel
Strand 3	F	92	98	parallel
Strand 4	F	62	68	anti-parallel
Strand 5	F	71	74	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	225	first strand
Strand 2	F	231	236	anti-parallel
Strand 3	F	240	244	anti-parallel
Strand 4	F	254	257	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	286	first strand
Strand 2	F	270	275	anti-parallel
Strand 3	F	261	267	anti-parallel
Strand 4	K	3	5	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WA0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WA0