Analysis of interatomic Contacts of Structural Units in PDB entry:
3WAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WAD entry

There are 2 chains in PDB entry 3WAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 415
B
 MET 1SER 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3WAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 27Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
39 45Right-handed alpha
Helix 4
4
A
88 107Right-handed alpha
Helix 5
5
A
108 123Right-handed alpha
Helix 6
6
A
134 143Right-handed alpha
Helix 7
7
A
155 170Right-handed alpha
Helix 8
8
A
172 176Right-handed 310
Helix 9
9
A
178 189Right-handed alpha
Helix 10
10
A
190 192Right-handed 310
Helix 11
11
A
197 202Right-handed alpha
Helix 12
12
A
210 214Right-handed 310
Helix 13
13
A
236 241Right-handed 310
Helix 14
14
A
252 258Right-handed alpha
Helix 15
15
A
265 274Right-handed alpha
Helix 16
16
A
285 293Right-handed alpha
Helix 17
17
A
306 311Right-handed alpha
Helix 18
18
A
322 332Right-handed alpha
Helix 19
19
A
345 356Right-handed alpha
Helix 20
20
A
363 367Right-handed 310
Helix 21
21
A
368 382Right-handed alpha
Helix 22
22
A
382 398Right-handed alpha
Helix 23
23
A
401 415Right-handed alpha
Helix 24
24
B
10 17Right-handed alpha
Helix 25
25
B
17 28Right-handed alpha
Helix 26
26
B
36 38Right-handed 310
Helix 27
27
B
39 45Right-handed alpha
Helix 28
28
B
83 87Right-handed 310
Helix 29
29
B
88 107Right-handed alpha
Helix 30
30
B
108 123Right-handed alpha
Helix 31
31
B
134 142Right-handed alpha
Helix 32
32
B
155 169Right-handed alpha
Helix 33
33
B
178 189Right-handed alpha
Helix 34
34
B
190 192Right-handed 310
Helix 35
35
B
197 202Right-handed alpha
Helix 36
36
B
210 214Right-handed 310
Helix 37
37
B
236 241Right-handed alpha
Helix 38
38
B
252 258Right-handed alpha
Helix 39
39
B
265 275Right-handed alpha
Helix 40
40
B
285 293Right-handed alpha
Helix 41
41
B
306 311Right-handed alpha
Helix 42
42
B
322 333Right-handed alpha
Helix 43
43
B
345 356Right-handed alpha
Helix 44
44
B
363 367Right-handed 310
Helix 45
45
B
368 382Right-handed alpha
Helix 46
46
B
383 398Right-handed alpha
Helix 47
47
B
401 416Right-handed alpha
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There are 4 sheets in PDB entry 3WAD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
147 150parallel
Strand 3
A
126 130parallel
Strand 4
A
2 6parallel
Strand 5
A
30 35parallel
Strand 6
A
49 52parallel
Strand 7
B
233 234parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
B
49 52parallel
Strand 3
B
30 35parallel
Strand 4
B
2 6parallel
Strand 5
B
126 130parallel
Strand 6
B
147 150parallel
Strand 7
B
204 206parallel
Strand 8
B
221 222parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
279 283parallel
Strand 3
A
247 250parallel
Strand 4
A
314 319parallel
Strand 5
A
336 338parallel
Strand 6
A
359 361parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 302first strand
Strand 2
B
279 283parallel
Strand 3
B
247 251parallel
Strand 4
B
314 319parallel
Strand 5
B
336 338parallel
Strand 6
B
359 361parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il