Analysis of interatomic Contacts of Structural Units in PDB entry:
3WAI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WAI entry

There is 1 chain in PDB entry 3WAI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 868
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3WAI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
42 51Right-handed alpha
Helix 3
3
A
66 73Right-handed alpha
Helix 4
4
A
82 87Right-handed alpha
Helix 5
5
A
90 96Right-handed alpha
Helix 6
6
A
128 130Right-handed 310
Helix 7
7
A
131 142Right-handed alpha
Helix 8
8
A
153 162Right-handed alpha
Helix 9
9
A
185 201Right-handed alpha
Helix 10
10
A
209 219Right-handed alpha
Helix 11
11
A
228 230Right-handed 310
Helix 12
12
A
231 239Right-handed alpha
Helix 13
13
A
272 283Right-handed alpha
Helix 14
14
A
286 297Right-handed alpha
Helix 15
15
A
304 312Right-handed alpha
Helix 16
16
A
314 327Right-handed alpha
Helix 17
17
A
332 352Right-handed alpha
Helix 18
18
A
356 514Right-handed alpha
Helix 19
19
A
516 522Right-handed alpha
Helix 20
20
A
550 552Right-handed 310
Helix 21
21
A
553 560Right-handed alpha
Helix 22
22
A
583 589Right-handed alpha
Helix 23
23
A
592 603Right-handed alpha
Helix 24
24
A
612 616Right-handed alpha
Helix 25
25
A
618 628Right-handed alpha
Helix 26
26
A
630 637Right-handed 310
Helix 27
27
A
654 658Right-handed 310
Helix 28
28
A
671 676Right-handed alpha
Helix 29
29
A
677 684Right-handed alpha
Helix 30
30
A
702 709Right-handed alpha
Helix 31
31
A
716 733Right-handed alpha
Helix 32
32
A
739 755Right-handed alpha
Helix 33
33
A
755 760Right-handed alpha
Helix 34
34
A
854 861Right-handed alpha
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There are 11 sheets in PDB entry 3WAI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
6 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
301 302anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
6 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
328 329parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
222 227parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
242 245anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
253 254anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 547first strand
Strand 2
A
564 565parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 611first strand
Strand 2
A
771 776anti-parallel
Strand 3
A
693 698anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 652first strand
Strand 2
A
640 643anti-parallel
Strand 3
A
663 664anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 824first strand
Strand 2
A
780 785anti-parallel
Strand 3
A
863 865parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 814first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
835 836anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 814first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
840 844anti-parallel
Strand 4
A
847 851anti-parallel
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