Analysis of interatomic Contacts of Structural Units in PDB entry:
3WAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WAJ entry

There is 1 chain in PDB entry 3WAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15LEU 868
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3WAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
32 37Right-handed alpha
Helix 3
3
A
46 61Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
101 119Right-handed alpha
Helix 6
6
A
120 132Right-handed alpha
Helix 7
7
A
133 145Right-handed alpha
Helix 8
8
A
149 154Right-handed alpha
Helix 9
9
A
162 182Right-handed alpha
Helix 10
10
A
198 215Right-handed alpha
Helix 11
11
A
216 219Right-handed 310
Helix 12
12
A
220 235Right-handed alpha
Helix 13
13
A
242 262Right-handed alpha
Helix 14
14
A
263 265Right-handed 310
Helix 15
15
A
277 304Right-handed alpha
Helix 16
16
A
304 309Right-handed alpha
Helix 17
17
A
311 313Right-handed 310
Helix 18
18
A
314 333Right-handed alpha
Helix 19
19
A
375 382Right-handed alpha
Helix 20
20
A
383 403Right-handed alpha
Helix 21
21
A
404 421Right-handed alpha
Helix 22
22
A
424 429Right-handed 310
Helix 23
23
A
430 447Right-handed alpha
Helix 24
24
A
448 450Right-handed 310
Helix 25
25
A
473 492Right-handed alpha
Helix 26
26
A
500 514Right-handed alpha
Helix 27
27
A
516 525Right-handed alpha
Helix 28
28
A
550 552Right-handed 310
Helix 29
29
A
553 562Right-handed alpha
Helix 30
30
A
583 589Right-handed alpha
Helix 31
31
A
592 603Right-handed alpha
Helix 32
32
A
612 616Right-handed alpha
Helix 33
33
A
618 628Right-handed alpha
Helix 34
34
A
629 634Right-handed alpha
Helix 35
35
A
635 637Right-handed 310
Helix 36
36
A
654 658Right-handed 310
Helix 37
37
A
673 676Right-handed 310
Helix 38
38
A
677 684Right-handed alpha
Helix 39
39
A
702 709Right-handed alpha
Helix 40
40
A
716 733Right-handed alpha
Helix 41
41
A
739 755Right-handed alpha
Helix 42
42
A
854 861Right-handed alpha
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There are 6 sheets in PDB entry 3WAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
78 79anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
546 548parallel
Strand 3
A
605 611parallel
Strand 4
A
771 776anti-parallel
Strand 5
A
693 698anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 652first strand
Strand 2
A
640 643anti-parallel
Strand 3
A
663 664anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 824first strand
Strand 2
A
780 785anti-parallel
Strand 3
A
863 865parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 814first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
835 836anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 814first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
841 844anti-parallel
Strand 4
A
847 848anti-parallel
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