Analysis of interatomic Contacts of Structural Units in PDB entry:
3WAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WAK entry

There is 1 chain in PDB entry 3WAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LEU 868
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3WAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 29Right-handed alpha
Helix 2
2
A
32 37Right-handed alpha
Helix 3
3
A
46 61Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
101 110Right-handed alpha
Helix 6
6
A
110 120Right-handed alpha
Helix 7
7
A
120 132Right-handed alpha
Helix 8
8
A
133 144Right-handed alpha
Helix 9
9
A
149 154Right-handed alpha
Helix 10
10
A
162 185Right-handed alpha
Helix 11
11
A
194 197Right-handed 310
Helix 12
12
A
198 213Right-handed alpha
Helix 13
13
A
215 219Right-handed 310
Helix 14
14
A
220 235Right-handed alpha
Helix 15
15
A
242 262Right-handed alpha
Helix 16
16
A
263 265Right-handed 310
Helix 17
17
A
277 303Right-handed alpha
Helix 18
18
A
304 309Right-handed alpha
Helix 19
19
A
311 313Right-handed 310
Helix 20
20
A
314 326Right-handed alpha
Helix 21
21
A
329 333Right-handed 310
Helix 22
22
A
337 347Right-handed alpha
Helix 23
23
A
374 382Right-handed alpha
Helix 24
24
A
383 402Right-handed alpha
Helix 25
25
A
404 424Right-handed alpha
Helix 26
26
A
425 430Right-handed 310
Helix 27
27
A
431 450Right-handed alpha
Helix 28
28
A
455 460Right-handed alpha
Helix 29
29
A
467 493Right-handed alpha
Helix 30
30
A
500 512Right-handed alpha
Helix 31
31
A
516 524Right-handed alpha
Helix 32
32
A
550 552Right-handed 310
Helix 33
33
A
553 562Right-handed alpha
Helix 34
34
A
584 589Right-handed alpha
Helix 35
35
A
593 603Right-handed alpha
Helix 36
36
A
612 616Right-handed alpha
Helix 37
37
A
618 628Right-handed alpha
Helix 38
38
A
629 634Right-handed alpha
Helix 39
39
A
671 676Right-handed alpha
Helix 40
40
A
677 684Right-handed alpha
Helix 41
41
A
703 709Right-handed alpha
Helix 42
42
A
716 731Right-handed alpha
Helix 43
43
A
739 754Right-handed alpha
Helix 44
44
A
854 859Right-handed alpha
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There are 5 sheets in PDB entry 3WAK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
78 79anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 548first strand
Strand 2
A
605 611parallel
Strand 3
A
771 776anti-parallel
Strand 4
A
693 698anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 652first strand
Strand 2
A
637 643anti-parallel
Strand 3
A
663 670anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 824first strand
Strand 2
A
780 785anti-parallel
Strand 3
A
864 865parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 814first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
835 836anti-parallel
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