Analysis of interatomic Contacts of Structural Units in PDB entry:
3WB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WB9 entry

There are 3 chains in PDB entry 3WB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 299
B
 LYS 3VAL 299
C
 LYS 3VAL 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3WB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
43 47Right-handed 310
Helix 3
3
A
54 58Right-handed 310
Helix 4
4
A
69 71Right-handed 310
Helix 5
5
A
72 82Right-handed alpha
Helix 6
6
A
96 111Right-handed alpha
Helix 7
7
A
124 137Right-handed alpha
Helix 8
8
A
152 160Right-handed alpha
Helix 9
9
A
192 203Right-handed alpha
Helix 10
10
A
253 269Right-handed alpha
Helix 11
11
A
277 281Right-handed 310
Helix 12
12
A
282 287Right-handed 310
Helix 13
13
A
290 299Right-handed alpha
Helix 14
14
B
12 25Right-handed alpha
Helix 15
15
B
43 47Right-handed 310
Helix 16
16
B
54 58Right-handed 310
Helix 17
17
B
69 71Right-handed 310
Helix 18
18
B
72 82Right-handed alpha
Helix 19
19
B
96 111Right-handed alpha
Helix 20
20
B
124 137Right-handed alpha
Helix 21
21
B
151 160Right-handed alpha
Helix 22
22
B
192 202Right-handed alpha
Helix 23
23
B
219 223Right-handed 310
Helix 24
24
B
253 269Right-handed alpha
Helix 25
25
B
277 281Right-handed 310
Helix 26
26
B
282 287Right-handed 310
Helix 27
27
B
290 299Right-handed alpha
Helix 28
28
C
12 25Right-handed alpha
Helix 29
29
C
43 47Right-handed 310
Helix 30
30
C
54 58Right-handed 310
Helix 31
31
C
69 71Right-handed 310
Helix 32
32
C
72 82Right-handed alpha
Helix 33
33
C
96 111Right-handed alpha
Helix 34
34
C
124 137Right-handed alpha
Helix 35
35
C
152 160Right-handed alpha
Helix 36
36
C
192 202Right-handed alpha
Helix 37
37
C
253 269Right-handed alpha
Helix 38
38
C
277 281Right-handed 310
Helix 39
39
C
282 287Right-handed 310
Helix 40
40
C
290 299Right-handed alpha
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There are 8 sheets in PDB entry 3WB9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
28 34parallel
Strand 3
A
4 9parallel
Strand 4
A
63 66parallel
Strand 5
A
86 88parallel
Strand 6
A
114 116parallel
Strand 7
A
274 276parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 146first strand
Strand 2
A
226 237anti-parallel
Strand 3
A
240 252anti-parallel
Strand 4
C
240 252anti-parallel
Strand 5
C
226 237anti-parallel
Strand 6
C
139 146anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
164 175anti-parallel
Strand 3
A
178 187anti-parallel
Strand 4
A
211 215parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
28 34parallel
Strand 3
B
4 9parallel
Strand 4
B
63 66parallel
Strand 5
B
86 88parallel
Strand 6
B
114 116parallel
Strand 7
B
274 276parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 146first strand
Strand 2
B
226 237anti-parallel
Strand 3
B
240 252anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
164 175anti-parallel
Strand 3
B
178 187anti-parallel
Strand 4
B
211 215parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
28 34parallel
Strand 3
C
4 9parallel
Strand 4
C
63 66parallel
Strand 5
C
86 88parallel
Strand 6
C
114 116parallel
Strand 7
C
274 276parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 151first strand
Strand 2
C
164 175anti-parallel
Strand 3
C
178 187anti-parallel
Strand 4
C
211 215parallel
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