Analysis of interatomic Contacts of Structural Units in PDB entry:
3WBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WBW entry

There are 2 chains in PDB entry 3WBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9PHE 279
B
 GLU 9PHE 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3WBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 48Right-handed alpha
Helix 2
2
A
55 59Right-handed 310
Helix 3
3
A
60 68Right-handed alpha
Helix 4
4
A
81 85Right-handed 310
Helix 5
5
A
86 101Right-handed alpha
Helix 6
6
A
115 119Right-handed 310
Helix 7
7
A
120 134Right-handed alpha
Helix 8
8
A
146 158Right-handed alpha
Helix 9
9
A
174 184Right-handed alpha
Helix 10
10
A
194 201Right-handed 310
Helix 11
11
A
202 213Right-handed alpha
Helix 12
12
A
215 227Right-handed alpha
Helix 13
13
A
237 246Right-handed alpha
Helix 14
14
A
253 262Right-handed alpha
Helix 15
15
B
33 48Right-handed alpha
Helix 16
16
B
55 59Right-handed 310
Helix 17
17
B
60 68Right-handed alpha
Helix 18
18
B
81 85Right-handed 310
Helix 19
19
B
86 101Right-handed alpha
Helix 20
20
B
115 119Right-handed 310
Helix 21
21
B
120 134Right-handed alpha
Helix 22
22
B
146 158Right-handed alpha
Helix 23
23
B
174 184Right-handed alpha
Helix 24
24
B
194 201Right-handed 310
Helix 25
25
B
202 212Right-handed alpha
Helix 26
26
B
215 227Right-handed alpha
Helix 27
27
B
237 246Right-handed alpha
Helix 28
28
B
253 262Right-handed alpha
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There are 4 sheets in PDB entry 3WBW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
21 23anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
51 53parallel
Strand 3
A
75 80parallel
Strand 4
A
106 111parallel
Strand 5
A
137 143parallel
Strand 6
A
163 167parallel
Strand 7
A
187 191parallel
Strand 8
A
230 231parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
21 23anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
51 53parallel
Strand 3
B
75 80parallel
Strand 4
B
106 111parallel
Strand 5
B
137 143parallel
Strand 6
B
163 167parallel
Strand 7
B
187 191parallel
Strand 8
B
230 231parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il