Analysis of interatomic Contacts of Structural Units in PDB entry:
3WCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WCR entry

There are 2 chains in PDB entry 3WCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22SER 256
B
 ALA 22ALA 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3WCR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 35Right-handed 310
Helix 2
2
A
123 127Right-handed 310
Helix 3
3
A
136 140Right-handed 310
Helix 4
4
A
217 221Right-handed 310
Helix 5
5
B
33 35Right-handed 310
Helix 6
6
B
123 127Right-handed 310
Helix 7
7
B
136 140Right-handed 310
Helix 8
8
B
217 221Right-handed 310
Helix 9
9
B
266 270Right-handed alpha
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There are 10 sheets in PDB entry 3WCR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
245 255anti-parallel
Strand 3
A
51 52anti-parallel
Strand 4
A
44 45anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
245 255anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
183 191anti-parallel
Strand 5
A
196 203anti-parallel
Strand 6
A
208 215anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
76 77anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
107 115anti-parallel
Strand 5
A
142 147anti-parallel
Strand 6
A
160 165anti-parallel
Strand 7
A
172 175anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
85 86anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 29first strand
Strand 2
B
245 255anti-parallel
Strand 3
B
51 52anti-parallel
Strand 4
B
44 45anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 29first strand
Strand 2
B
245 255anti-parallel
Strand 3
B
88 97anti-parallel
Strand 4
B
182 191anti-parallel
Strand 5
B
196 202anti-parallel
Strand 6
B
209 215anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
225 234anti-parallel
Strand 4
B
76 77anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
225 234anti-parallel
Strand 4
B
107 115anti-parallel
Strand 5
B
142 147anti-parallel
Strand 6
B
160 165anti-parallel
Strand 7
B
172 175anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
85 86anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il