Analysis of interatomic Contacts of Structural Units in PDB entry:
3WCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WCY entry

There are 2 chains in PDB entry 3WCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9SER 400
I
 ILE 1GLN 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3WCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 99Right-handed alpha
Helix 2
2
A
239 244Right-handed alpha
Helix 3
3
I
3 23Right-handed alpha
Helix 4
4
I
39 44Right-handed alpha
Helix 5
5
I
47 68Right-handed alpha
Helix 6
6
I
70 74Right-handed 310
Helix 7
7
I
76 97Right-handed alpha
Helix 8
8
I
102 110Right-handed alpha
Helix 9
9
I
111 131Right-handed alpha
Helix 10
10
I
134 156Right-handed alpha
Helix 11
11
I
157 160Right-handed 310
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There are 7 sheets in PDB entry 3WCY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
12 14anti-parallel
Strand 3
A
100 101parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
160 163anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
171 179anti-parallel
Strand 4
A
193 196anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
217 221anti-parallel
Strand 3
A
266 269anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
235 238anti-parallel
Strand 3
A
277 281anti-parallel
Strand 4
A
297 300anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 316first strand
Strand 2
A
321 326anti-parallel
Strand 3
A
358 361anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
336 343anti-parallel
Strand 3
A
369 377anti-parallel
Strand 4
A
392 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il