Analysis of interatomic Contacts of Structural Units in PDB entry:
3WD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WD6 entry

There are 4 chains in PDB entry 3WD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9ASN 250
B
 ILE 10ASN 250
C
 ILE 10ASN 250
D
 ASN 9ASN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3WD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 52Right-handed alpha
Helix 2
2
A
68 73Right-handed alpha
Helix 3
3
A
91 103Right-handed alpha
Helix 4
4
A
112 126Right-handed alpha
Helix 5
5
A
126 139Right-handed alpha
Helix 6
6
A
140 143Right-handed 310
Helix 7
7
A
144 166Right-handed alpha
Helix 8
8
A
176 190Right-handed alpha
Helix 9
9
A
191 193Right-handed 310
Helix 10
10
A
205 217Right-handed alpha
Helix 11
11
A
218 223Right-handed alpha
Helix 12
12
A
227 241Right-handed alpha
Helix 13
13
B
38 52Right-handed alpha
Helix 14
14
B
68 73Right-handed alpha
Helix 15
15
B
91 103Right-handed alpha
Helix 16
16
B
112 126Right-handed alpha
Helix 17
17
B
126 138Right-handed alpha
Helix 18
18
B
144 166Right-handed alpha
Helix 19
19
B
176 190Right-handed alpha
Helix 20
20
B
191 193Right-handed 310
Helix 21
21
B
201 216Right-handed alpha
Helix 22
22
B
218 223Right-handed alpha
Helix 23
23
B
227 239Right-handed alpha
Helix 24
24
B
240 242Right-handed 310
Helix 25
25
C
38 52Right-handed alpha
Helix 26
26
C
68 73Right-handed alpha
Helix 27
27
C
91 103Right-handed alpha
Helix 28
28
C
112 126Right-handed alpha
Helix 29
29
C
126 140Right-handed alpha
Helix 30
30
C
145 166Right-handed alpha
Helix 31
31
C
176 191Right-handed alpha
Helix 32
32
C
195 199Right-handed 310
Helix 33
33
C
205 218Right-handed alpha
Helix 34
34
C
218 225Right-handed alpha
Helix 35
35
C
227 235Right-handed alpha
Helix 36
36
D
38 52Right-handed alpha
Helix 37
37
D
68 73Right-handed alpha
Helix 38
38
D
91 103Right-handed alpha
Helix 39
39
D
112 126Right-handed alpha
Helix 40
40
D
126 139Right-handed alpha
Helix 41
41
D
144 166Right-handed alpha
Helix 42
42
D
176 191Right-handed alpha
Helix 43
43
D
205 217Right-handed alpha
Helix 44
44
D
218 223Right-handed alpha
Helix 45
45
D
227 239Right-handed alpha
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There are 4 sheets in PDB entry 3WD6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
56 60parallel
Strand 3
A
31 34parallel
Strand 4
A
80 84anti-parallel
Strand 5
A
87 90anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
31 34parallel
Strand 3
B
80 84anti-parallel
Strand 4
B
87 90anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
55 60parallel
Strand 3
C
30 34parallel
Strand 4
C
80 84anti-parallel
Strand 5
C
87 90anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 59first strand
Strand 2
D
30 34parallel
Strand 3
D
80 84anti-parallel
Strand 4
D
87 90anti-parallel
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