Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WDH entry

There is 1 chain in PDB entry 3WDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10CYS 710
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3WDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 96Right-handed 310
Helix 2
2
A
97 105Right-handed alpha
Helix 3
3
A
192 196Right-handed 310
Helix 4
4
A
202 207Right-handed 310
Helix 5
5
A
218 222Right-handed 310
Helix 6
6
A
245 251Right-handed 310
Helix 7
7
A
256 260Right-handed 310
Helix 8
8
A
262 271Right-handed alpha
Helix 9
9
A
290 294Right-handed 310
Helix 10
10
A
319 335Right-handed alpha
Helix 11
11
A
350 353Right-handed 310
Helix 12
12
A
354 360Right-handed alpha
Helix 13
13
A
387 406Right-handed alpha
Helix 14
14
A
414 418Right-handed 310
Helix 15
15
A
419 432Right-handed alpha
Helix 16
16
A
451 455Right-handed 310
Helix 17
17
A
457 464Right-handed 310
Helix 18
18
A
471 479Right-handed alpha
Helix 19
19
A
489 493Right-handed 310
Helix 20
20
A
494 496Right-handed 310
Helix 21
21
A
497 506Right-handed alpha
Helix 22
22
A
514 516Right-handed 310
Helix 23
23
A
529 538Right-handed alpha
Helix 24
24
A
542 560Right-handed alpha
Helix 25
25
A
569 573Right-handed 310
Helix 26
26
A
586 591Right-handed alpha
Helix 27
27
A
593 600Right-handed alpha
Helix 28
28
A
600 617Right-handed alpha
Helix 29
29
A
618 621Right-handed 310
Helix 30
30
A
624 631Right-handed alpha
Helix 31
31
A
649 653Right-handed 310
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There are 8 sheets in PDB entry 3WDH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
20 26anti-parallel
Strand 4
A
12 17anti-parallel
Strand 5
A
90 91parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
78 81anti-parallel
Strand 4
A
86 88anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
150 151anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
131 137anti-parallel
Strand 3
A
169 176anti-parallel
Strand 4
A
179 183anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
131 137anti-parallel
Strand 3
A
169 176anti-parallel
Strand 4
A
198 199anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
274 277parallel
Strand 3
A
338 344parallel
Strand 4
A
409 413parallel
Strand 5
A
438 441parallel
Strand 6
A
468 470parallel
Strand 7
A
518 520parallel
Strand 8
A
563 567parallel
Strand 9
A
224 227parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 634first strand
Strand 2
A
641 646anti-parallel
Strand 3
A
657 663anti-parallel
Strand 4
A
703 709anti-parallel
Strand 5
A
678 682anti-parallel
Strand 6
A
692 693anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 672first strand
Strand 2
A
696 698anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il