Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WDJ entry

There is 1 chain in PDB entry 3WDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 11CYS 710
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3WDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 96Right-handed 310
Helix 2
2
A
97 105Right-handed alpha
Helix 3
3
A
192 196Right-handed 310
Helix 4
4
A
202 207Right-handed 310
Helix 5
5
A
218 222Right-handed 310
Helix 6
6
A
230 235Right-handed alpha
Helix 7
7
A
245 251Right-handed 310
Helix 8
8
A
256 260Right-handed 310
Helix 9
9
A
262 271Right-handed alpha
Helix 10
10
A
290 294Right-handed 310
Helix 11
11
A
319 335Right-handed alpha
Helix 12
12
A
350 353Right-handed 310
Helix 13
13
A
354 360Right-handed alpha
Helix 14
14
A
387 406Right-handed alpha
Helix 15
15
A
414 418Right-handed 310
Helix 16
16
A
419 432Right-handed alpha
Helix 17
17
A
451 455Right-handed 310
Helix 18
18
A
457 464Right-handed 310
Helix 19
19
A
471 479Right-handed alpha
Helix 20
20
A
489 493Right-handed 310
Helix 21
21
A
494 496Right-handed 310
Helix 22
22
A
497 506Right-handed alpha
Helix 23
23
A
514 516Right-handed 310
Helix 24
24
A
529 538Right-handed alpha
Helix 25
25
A
542 560Right-handed alpha
Helix 26
26
A
569 573Right-handed 310
Helix 27
27
A
586 591Right-handed alpha
Helix 28
28
A
593 600Right-handed alpha
Helix 29
29
A
600 617Right-handed alpha
Helix 30
30
A
618 621Right-handed 310
Helix 31
31
A
624 631Right-handed alpha
Helix 32
32
A
649 653Right-handed 310
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There are 8 sheets in PDB entry 3WDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
20 25anti-parallel
Strand 4
A
12 17anti-parallel
Strand 5
A
90 91parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
78 81anti-parallel
Strand 4
A
87 88anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
120 125anti-parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
150 151anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
131 137anti-parallel
Strand 3
A
169 176anti-parallel
Strand 4
A
179 183anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
131 137anti-parallel
Strand 3
A
169 176anti-parallel
Strand 4
A
198 199anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
274 277parallel
Strand 3
A
338 343parallel
Strand 4
A
409 412parallel
Strand 5
A
438 441parallel
Strand 6
A
468 470parallel
Strand 7
A
518 520parallel
Strand 8
A
563 567parallel
Strand 9
A
224 227parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
301 307anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 634first strand
Strand 2
A
641 646anti-parallel
Strand 3
A
657 663anti-parallel
Strand 4
A
703 709anti-parallel
Strand 5
A
670 682anti-parallel
Strand 6
A
692 698anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il