Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WDK entry

There are 4 chains in PDB entry 3WDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9LEU 260
B
 ARG 10ARG 256
C
 PRO 9LYS 258
D
 ARG 10LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3WDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 26Right-handed alpha
Helix 2
2
A
30 47Right-handed alpha
Helix 3
3
A
52 69Right-handed alpha
Helix 4
4
A
77 84Right-handed alpha
Helix 5
5
A
84 95Right-handed alpha
Helix 6
6
A
107 120Right-handed alpha
Helix 7
7
A
163 173Right-handed alpha
Helix 8
8
A
186 192Right-handed alpha
Helix 9
9
A
199 214Right-handed alpha
Helix 10
10
A
218 229Right-handed alpha
Helix 11
11
A
230 253Right-handed alpha
Helix 12
12
B
11 26Right-handed alpha
Helix 13
13
B
30 48Right-handed alpha
Helix 14
14
B
52 69Right-handed alpha
Helix 15
15
B
77 84Right-handed alpha
Helix 16
16
B
84 95Right-handed alpha
Helix 17
17
B
107 120Right-handed alpha
Helix 18
18
B
140 143Right-handed 310
Helix 19
19
B
163 173Right-handed alpha
Helix 20
20
B
186 192Right-handed alpha
Helix 21
21
B
199 215Right-handed alpha
Helix 22
22
B
218 229Right-handed alpha
Helix 23
23
B
230 250Right-handed alpha
Helix 24
24
C
10 26Right-handed alpha
Helix 25
25
C
31 48Right-handed alpha
Helix 26
26
C
52 69Right-handed alpha
Helix 27
27
C
77 84Right-handed alpha
Helix 28
28
C
84 95Right-handed alpha
Helix 29
29
C
107 120Right-handed alpha
Helix 30
30
C
150 154Right-handed 310
Helix 31
31
C
163 173Right-handed alpha
Helix 32
32
C
186 192Right-handed alpha
Helix 33
33
C
199 215Right-handed alpha
Helix 34
34
C
218 229Right-handed alpha
Helix 35
35
C
230 253Right-handed alpha
Helix 36
36
D
11 26Right-handed alpha
Helix 37
37
D
30 48Right-handed alpha
Helix 38
38
D
52 69Right-handed alpha
Helix 39
39
D
77 84Right-handed alpha
Helix 40
40
D
84 95Right-handed alpha
Helix 41
41
D
107 122Right-handed alpha
Helix 42
42
D
150 154Right-handed 310
Helix 43
43
D
163 173Right-handed alpha
Helix 44
44
D
186 192Right-handed alpha
Helix 45
45
D
199 215Right-handed alpha
Helix 46
46
D
218 229Right-handed alpha
Helix 47
47
D
230 252Right-handed alpha
Helix 48
48
D
256 260Right-handed 310
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There are 8 sheets in PDB entry 3WDK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
98 101parallel
Strand 3
A
72 76parallel
Strand 4
A
156 158parallel
Strand 5
A
176 180parallel
Strand 6
A
194 196parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
145 146anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
98 101parallel
Strand 3
B
72 76parallel
Strand 4
B
156 158parallel
Strand 5
B
176 180parallel
Strand 6
B
194 196parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
145 146anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 101first strand
Strand 2
C
73 76parallel
Strand 3
C
156 158parallel
Strand 4
C
176 180parallel
Strand 5
C
194 196parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
145 146anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 128first strand
Strand 2
D
98 101parallel
Strand 3
D
73 76parallel
Strand 4
D
156 158parallel
Strand 5
D
176 180parallel
Strand 6
D
194 196parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 135first strand
Strand 2
D
145 146anti-parallel
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