Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WDM entry

There are 4 chains in PDB entry 3WDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LEU 260
B
 VAL 2ARG 257
C
 VAL 2GLU 259
D
 VAL 2GLU 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 3WDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 26Right-handed alpha
Helix 2
2
A
30 48Right-handed alpha
Helix 3
3
A
52 69Right-handed alpha
Helix 4
4
A
77 84Right-handed alpha
Helix 5
5
A
84 96Right-handed alpha
Helix 6
6
A
107 120Right-handed alpha
Helix 7
7
A
140 143Right-handed 310
Helix 8
8
A
150 154Right-handed 310
Helix 9
9
A
163 173Right-handed alpha
Helix 10
10
A
186 192Right-handed alpha
Helix 11
11
A
199 214Right-handed alpha
Helix 12
12
A
218 228Right-handed alpha
Helix 13
13
A
230 253Right-handed alpha
Helix 14
14
B
10 26Right-handed alpha
Helix 15
15
B
30 48Right-handed alpha
Helix 16
16
B
52 69Right-handed alpha
Helix 17
17
B
77 84Right-handed alpha
Helix 18
18
B
84 95Right-handed alpha
Helix 19
19
B
107 119Right-handed alpha
Helix 20
20
B
150 154Right-handed 310
Helix 21
21
B
163 173Right-handed alpha
Helix 22
22
B
186 192Right-handed alpha
Helix 23
23
B
199 214Right-handed alpha
Helix 24
24
B
218 229Right-handed alpha
Helix 25
25
B
230 251Right-handed alpha
Helix 26
26
C
10 26Right-handed alpha
Helix 27
27
C
30 48Right-handed alpha
Helix 28
28
C
52 69Right-handed alpha
Helix 29
29
C
77 84Right-handed alpha
Helix 30
30
C
84 96Right-handed alpha
Helix 31
31
C
107 122Right-handed alpha
Helix 32
32
C
140 143Right-handed 310
Helix 33
33
C
150 154Right-handed 310
Helix 34
34
C
163 173Right-handed alpha
Helix 35
35
C
186 192Right-handed alpha
Helix 36
36
C
199 215Right-handed alpha
Helix 37
37
C
218 228Right-handed alpha
Helix 38
38
C
230 253Right-handed alpha
Helix 39
39
D
10 26Right-handed alpha
Helix 40
40
D
30 48Right-handed alpha
Helix 41
41
D
52 67Right-handed alpha
Helix 42
42
D
77 84Right-handed alpha
Helix 43
43
D
84 95Right-handed alpha
Helix 44
44
D
107 120Right-handed alpha
Helix 45
45
D
163 173Right-handed alpha
Helix 46
46
D
186 192Right-handed alpha
Helix 47
47
D
199 214Right-handed alpha
Helix 48
48
D
218 228Right-handed alpha
Helix 49
49
D
230 250Right-handed alpha
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There are 9 sheets in PDB entry 3WDM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
73 76parallel
Strand 3
A
156 158parallel
Strand 4
A
176 180parallel
Strand 5
A
194 196parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
145 146anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
98 101parallel
Strand 3
B
72 76parallel
Strand 4
B
156 158parallel
Strand 5
B
176 180parallel
Strand 6
B
194 196parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
145 146anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
D
254 256anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 128first strand
Strand 2
C
98 101parallel
Strand 3
C
73 76parallel
Strand 4
C
156 158parallel
Strand 5
C
176 180parallel
Strand 6
C
194 196parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
145 146anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 128first strand
Strand 2
D
98 101parallel
Strand 3
D
72 76parallel
Strand 4
D
156 160parallel
Strand 5
D
176 180parallel
Strand 6
D
194 196parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 135first strand
Strand 2
D
145 146anti-parallel
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