Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WDO entry

There is 1 chain in PDB entry 3WDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LEU 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3WDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 38Right-handed alpha
Helix 2
2
A
46 75Right-handed alpha
Helix 3
3
A
77 98Right-handed alpha
Helix 4
4
A
100 114Right-handed alpha
Helix 5
5
A
116 127Right-handed alpha
Helix 6
6
A
129 131Right-handed 310
Helix 7
7
A
132 162Right-handed alpha
Helix 8
8
A
163 184Right-handed alpha
Helix 9
9
A
202 210Right-handed alpha
Helix 10
10
A
211 242Right-handed alpha
Helix 11
11
A
245 274Right-handed alpha
Helix 12
12
A
276 299Right-handed alpha
Helix 13
13
A
301 330Right-handed alpha
Helix 14
14
A
335 365Right-handed alpha
Helix 15
15
A
366 387Right-handed alpha
Helix 16
16
A
408 417Right-handed alpha
Helix 17
17
A
443 453Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3WDO.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 400first strand
Strand 2
A
432 437anti-parallel
Strand 3
A
421 427anti-parallel
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