Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WDP entry

There are 4 chains in PDB entry 3WDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	ALA 1	LYS 472
Q	ALA 1	LYS 472
R	ALA 1	LYS 472
S	ALA 1	LYS 472

There are103 helices in PDB entry 3WDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	P	14	19	Right-handed alpha
Helix 2	2	P	29	37	Right-handed alpha
Helix 3	3	P	37	43	Right-handed alpha
Helix 4	4	P	50	54	Right-handed 310
Helix 5	5	P	56	71	Right-handed alpha
Helix 6	6	P	81	86	Right-handed alpha
Helix 7	7	P	111	122	Right-handed alpha
Helix 8	8	P	123	139	Right-handed alpha
Helix 9	9	P	159	167	Right-handed alpha
Helix 10	10	P	168	171	Right-handed 310
Helix 11	11	P	173	176	Right-handed 310
Helix 12	12	P	177	196	Right-handed alpha
Helix 13	13	P	197	199	Right-handed 310
Helix 14	14	P	207	217	Right-handed alpha
Helix 15	15	P	218	222	Right-handed 310
Helix 16	16	P	229	255	Right-handed alpha
Helix 17	17	P	272	274	Right-handed 310
Helix 18	18	P	275	287	Right-handed alpha
Helix 19	19	P	287	296	Right-handed alpha
Helix 20	20	P	325	329	Right-handed 310
Helix 21	21	P	349	365	Right-handed alpha
Helix 22	22	P	382	400	Right-handed alpha
Helix 23	23	P	417	424	Right-handed 310
Helix 24	24	P	441	454	Right-handed alpha
Helix 25	25	P	457	465	Right-handed 310
Helix 26	26	P	466	470	Right-handed 310
Helix 27	27	Q	14	19	Right-handed alpha
Helix 28	28	Q	29	37	Right-handed alpha
Helix 29	29	Q	37	43	Right-handed alpha
Helix 30	30	Q	50	54	Right-handed 310
Helix 31	31	Q	56	71	Right-handed alpha
Helix 32	32	Q	81	86	Right-handed alpha
Helix 33	33	Q	111	122	Right-handed alpha
Helix 34	34	Q	123	139	Right-handed alpha
Helix 35	35	Q	159	167	Right-handed alpha
Helix 36	36	Q	168	171	Right-handed 310
Helix 37	37	Q	173	176	Right-handed 310
Helix 38	38	Q	177	196	Right-handed alpha
Helix 39	39	Q	197	199	Right-handed 310
Helix 40	40	Q	207	217	Right-handed alpha
Helix 41	41	Q	218	222	Right-handed 310
Helix 42	42	Q	229	255	Right-handed alpha
Helix 43	43	Q	272	274	Right-handed 310
Helix 44	44	Q	275	296	Right-handed alpha
Helix 45	45	Q	325	329	Right-handed 310
Helix 46	46	Q	349	365	Right-handed alpha
Helix 47	47	Q	382	400	Right-handed alpha
Helix 48	48	Q	417	424	Right-handed 310
Helix 49	49	Q	441	454	Right-handed alpha
Helix 50	50	Q	457	465	Right-handed 310
Helix 51	51	Q	466	470	Right-handed 310
Helix 52	52	R	14	19	Right-handed alpha
Helix 53	53	R	29	37	Right-handed alpha
Helix 54	54	R	37	43	Right-handed alpha
Helix 55	55	R	50	54	Right-handed 310
Helix 56	56	R	56	71	Right-handed alpha
Helix 57	57	R	81	86	Right-handed alpha
Helix 58	58	R	111	122	Right-handed alpha
Helix 59	59	R	123	139	Right-handed alpha
Helix 60	60	R	159	167	Right-handed alpha
Helix 61	61	R	168	171	Right-handed 310
Helix 62	62	R	173	176	Right-handed 310
Helix 63	63	R	177	196	Right-handed alpha
Helix 64	64	R	197	199	Right-handed 310
Helix 65	65	R	207	217	Right-handed alpha
Helix 66	66	R	218	222	Right-handed 310
Helix 67	67	R	229	255	Right-handed alpha
Helix 68	68	R	272	274	Right-handed 310
Helix 69	69	R	275	287	Right-handed alpha
Helix 70	70	R	287	296	Right-handed alpha
Helix 71	71	R	325	329	Right-handed 310
Helix 72	72	R	349	365	Right-handed alpha
Helix 73	73	R	382	400	Right-handed alpha
Helix 74	74	R	417	424	Right-handed 310
Helix 75	75	R	441	454	Right-handed alpha
Helix 76	76	R	457	459	Right-handed 310
Helix 77	77	R	460	465	Right-handed alpha
Helix 78	78	S	14	19	Right-handed alpha
Helix 79	79	S	29	37	Right-handed alpha
Helix 80	80	S	37	43	Right-handed alpha
Helix 81	81	S	50	54	Right-handed 310
Helix 82	82	S	56	71	Right-handed alpha
Helix 83	83	S	81	86	Right-handed alpha
Helix 84	84	S	111	122	Right-handed alpha
Helix 85	85	S	123	139	Right-handed alpha
Helix 86	86	S	159	167	Right-handed alpha
Helix 87	87	S	168	171	Right-handed 310
Helix 88	88	S	173	176	Right-handed 310
Helix 89	89	S	177	196	Right-handed alpha
Helix 90	90	S	197	199	Right-handed 310
Helix 91	91	S	207	217	Right-handed alpha
Helix 92	92	S	218	222	Right-handed 310
Helix 93	93	S	229	255	Right-handed alpha
Helix 94	94	S	272	274	Right-handed 310
Helix 95	95	S	275	287	Right-handed alpha
Helix 96	96	S	287	296	Right-handed alpha
Helix 97	97	S	325	329	Right-handed 310
Helix 98	98	S	349	365	Right-handed alpha
Helix 99	99	S	382	400	Right-handed alpha
Helix 100	100	S	417	424	Right-handed 310
Helix 101	101	S	441	454	Right-handed alpha
Helix 102	102	S	457	459	Right-handed 310
Helix 103	103	S	460	465	Right-handed alpha

There are 16 sheets in PDB entry 3WDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	8	12	first strand
Strand 2	P	75	79	parallel
Strand 3	P	143	147	parallel
Strand 4	P	201	206	parallel
Strand 5	P	258	264	parallel
Strand 6	P	302	305	parallel
Strand 7	P	368	372	parallel
Strand 8	P	404	409	parallel
Strand 9	P	8	12	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	99	first strand
Strand 2	P	105	109	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	267	270	first strand
Strand 2	P	309	314	parallel
Strand 3	P	319	321	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	429	431	first strand
Strand 2	P	438	440	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	8	12	first strand
Strand 2	Q	75	79	parallel
Strand 3	Q	143	147	parallel
Strand 4	Q	201	206	parallel
Strand 5	Q	258	264	parallel
Strand 6	Q	302	305	parallel
Strand 7	Q	368	372	parallel
Strand 8	Q	404	409	parallel
Strand 9	Q	8	12	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	96	99	first strand
Strand 2	Q	105	109	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	267	270	first strand
Strand 2	Q	309	314	parallel
Strand 3	Q	319	321	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	429	431	first strand
Strand 2	Q	438	440	anti-parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	8	12	first strand
Strand 2	R	75	79	parallel
Strand 3	R	143	147	parallel
Strand 4	R	201	206	parallel
Strand 5	R	259	264	parallel
Strand 6	R	302	305	parallel
Strand 7	R	368	372	parallel
Strand 8	R	404	409	parallel
Strand 9	R	8	12	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	96	99	first strand
Strand 2	R	105	109	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	267	270	first strand
Strand 2	R	309	315	parallel
Strand 3	R	318	321	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	429	431	first strand
Strand 2	R	438	440	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	8	12	first strand
Strand 2	S	75	79	parallel
Strand 3	S	143	147	parallel
Strand 4	S	201	206	parallel
Strand 5	S	258	264	parallel
Strand 6	S	302	305	parallel
Strand 7	S	368	372	parallel
Strand 8	S	404	409	parallel
Strand 9	S	8	12	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	96	99	first strand
Strand 2	S	105	109	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	267	270	first strand
Strand 2	S	309	314	parallel
Strand 3	S	319	321	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	429	431	first strand
Strand 2	S	438	440	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDP