Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WDR entry

There are 2 chains in PDB entry 3WDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 15PHE 84
A
 PHE 86TRP 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3WDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 43Right-handed alpha
Helix 2
2
A
59 62Right-handed 310
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
103 115Right-handed alpha
Helix 6
6
A
148 153Right-handed alpha
Helix 7
7
A
157 180Right-handed alpha
Helix 8
8
A
191 195Right-handed 310
Helix 9
9
A
197 202Right-handed alpha
Helix 10
10
A
203 220Right-handed alpha
Helix 11
11
A
239 244Right-handed 310
Helix 12
12
A
267 278Right-handed alpha
Helix 13
13
A
308 312Right-handed 310
Helix 14
14
A
322 332Right-handed alpha
Helix 15
15
A
337 341Right-handed 310
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There are 2 sheets in PDB entry 3WDR. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
335 336parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
79 83parallel
Strand 3
A
118 122parallel
Strand 4
A
184 187parallel
Strand 5
A
227 232parallel
Strand 6
A
252 257parallel
Strand 7
A
283 289parallel
Strand 8
A
304 306parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il