Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WDY entry

There are 4 chains in PDB entry 3WDY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1	PRO 296
B	TYR 1	PRO 296
C	TYR 1	PRO 296
D	TYR 1	PRO 296

There are 34 helices in PDB entry 3WDY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	15	Right-handed alpha
Helix 2	2	A	34	41	Right-handed alpha
Helix 3	3	A	175	182	Right-handed alpha
Helix 4	4	A	216	220	Right-handed 310
Helix 5	5	A	250	258	Right-handed alpha
Helix 6	6	A	263	267	Right-handed 310
Helix 7	7	A	269	277	Right-handed alpha
Helix 8	8	A	278	282	Right-handed 310
Helix 9	9	B	9	15	Right-handed alpha
Helix 10	10	B	34	41	Right-handed alpha
Helix 11	11	B	175	182	Right-handed alpha
Helix 12	12	B	216	220	Right-handed 310
Helix 13	13	B	250	258	Right-handed alpha
Helix 14	14	B	259	261	Right-handed 310
Helix 15	15	B	263	267	Right-handed 310
Helix 16	16	B	269	277	Right-handed alpha
Helix 17	17	B	278	282	Right-handed 310
Helix 18	18	C	9	15	Right-handed alpha
Helix 19	19	C	34	41	Right-handed alpha
Helix 20	20	C	175	182	Right-handed alpha
Helix 21	21	C	216	220	Right-handed 310
Helix 22	22	C	233	238	Right-handed alpha
Helix 23	23	C	269	277	Right-handed alpha
Helix 24	24	C	278	282	Right-handed 310
Helix 25	25	D	9	15	Right-handed alpha
Helix 26	26	D	34	41	Right-handed alpha
Helix 27	27	D	175	182	Right-handed alpha
Helix 28	28	D	216	220	Right-handed 310
Helix 29	29	D	233	238	Right-handed alpha
Helix 30	30	D	250	258	Right-handed alpha
Helix 31	31	D	259	261	Right-handed 310
Helix 32	32	D	263	267	Right-handed 310
Helix 33	33	D	269	277	Right-handed alpha
Helix 34	34	D	278	282	Right-handed 310

There are 16 sheets in PDB entry 3WDY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	286	295	anti-parallel
Strand 3	A	50	53	anti-parallel
Strand 4	A	44	47	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	286	295	anti-parallel
Strand 3	A	80	88	anti-parallel
Strand 4	A	185	192	anti-parallel
Strand 5	A	195	202	anti-parallel
Strand 6	A	225	227	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	70	73	anti-parallel
Strand 3	A	241	249	anti-parallel
Strand 4	A	96	104	anti-parallel
Strand 5	A	113	118	anti-parallel
Strand 6	A	127	131	anti-parallel
Strand 7	A	165	168	anti-parallel
Strand 8	A	146	147	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	66	68	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	286	295	anti-parallel
Strand 3	B	50	53	anti-parallel
Strand 4	B	44	47	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	286	295	anti-parallel
Strand 3	B	80	88	anti-parallel
Strand 4	B	185	192	anti-parallel
Strand 5	B	195	202	anti-parallel
Strand 6	B	225	227	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	70	77	anti-parallel
Strand 3	B	241	249	anti-parallel
Strand 4	B	96	104	anti-parallel
Strand 5	B	113	118	anti-parallel
Strand 6	B	127	131	anti-parallel
Strand 7	B	165	168	anti-parallel
Strand 8	B	146	147	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	66	68	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	285	295	anti-parallel
Strand 3	C	50	54	anti-parallel
Strand 4	C	44	47	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	285	295	anti-parallel
Strand 3	C	80	88	anti-parallel
Strand 4	C	185	192	anti-parallel
Strand 5	C	195	202	anti-parallel
Strand 6	C	225	227	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	C	70	73	anti-parallel
Strand 3	C	241	249	anti-parallel
Strand 4	C	96	104	anti-parallel
Strand 5	C	113	118	anti-parallel
Strand 6	C	127	131	anti-parallel
Strand 7	C	165	168	anti-parallel
Strand 8	C	146	147	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	66	68	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	286	295	anti-parallel
Strand 3	D	50	53	anti-parallel
Strand 4	D	44	47	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	286	295	anti-parallel
Strand 3	D	80	88	anti-parallel
Strand 4	D	185	192	anti-parallel
Strand 5	D	195	202	anti-parallel
Strand 6	D	225	227	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	19	first strand
Strand 2	D	70	73	anti-parallel
Strand 3	D	241	249	anti-parallel
Strand 4	D	96	104	anti-parallel
Strand 5	D	113	118	anti-parallel
Strand 6	D	127	131	anti-parallel
Strand 7	D	165	168	anti-parallel
Strand 8	D	146	147	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	66	68	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WDY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDY