Analysis of interatomic Contacts of Structural Units in PDB entry:
3WFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WFJ entry

There are 8 chains in PDB entry 3WFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 310
B	MET 1	ASN 310
C	MET 1	ASN 310
D	MET 1	ASN 310
E	MET 1	ASN 310
F	ALA 4	ASN 310
G	MET 1	ASN 310
H	ILE 3	ASN 310

There are124 helices in PDB entry 3WFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	22	Right-handed alpha
Helix 2	2	A	32	43	Right-handed alpha
Helix 3	3	A	82	91	Right-handed alpha
Helix 4	4	A	92	94	Right-handed 310
Helix 5	5	A	109	117	Right-handed alpha
Helix 6	6	A	118	120	Right-handed 310
Helix 7	7	A	156	169	Right-handed alpha
Helix 8	8	A	180	192	Right-handed alpha
Helix 9	9	A	193	202	Right-handed alpha
Helix 10	10	A	204	211	Right-handed alpha
Helix 11	11	A	213	232	Right-handed alpha
Helix 12	12	A	237	248	Right-handed alpha
Helix 13	13	A	259	266	Right-handed alpha
Helix 14	14	A	273	276	Right-handed 310
Helix 15	15	A	277	289	Right-handed alpha
Helix 16	16	A	292	310	Right-handed alpha
Helix 17	17	B	9	22	Right-handed alpha
Helix 18	18	B	32	43	Right-handed alpha
Helix 19	19	B	82	91	Right-handed alpha
Helix 20	20	B	92	94	Right-handed 310
Helix 21	21	B	109	117	Right-handed alpha
Helix 22	22	B	118	120	Right-handed 310
Helix 23	23	B	156	169	Right-handed alpha
Helix 24	24	B	180	192	Right-handed alpha
Helix 25	25	B	193	202	Right-handed alpha
Helix 26	26	B	204	211	Right-handed alpha
Helix 27	27	B	213	232	Right-handed alpha
Helix 28	28	B	237	248	Right-handed alpha
Helix 29	29	B	259	266	Right-handed alpha
Helix 30	30	B	273	276	Right-handed 310
Helix 31	31	B	277	289	Right-handed alpha
Helix 32	32	B	292	310	Right-handed alpha
Helix 33	33	C	9	22	Right-handed alpha
Helix 34	34	C	32	43	Right-handed alpha
Helix 35	35	C	82	91	Right-handed alpha
Helix 36	36	C	92	94	Right-handed 310
Helix 37	37	C	108	117	Right-handed alpha
Helix 38	38	C	118	120	Right-handed 310
Helix 39	39	C	156	169	Right-handed alpha
Helix 40	40	C	180	192	Right-handed alpha
Helix 41	41	C	193	202	Right-handed alpha
Helix 42	42	C	204	211	Right-handed alpha
Helix 43	43	C	213	232	Right-handed alpha
Helix 44	44	C	237	248	Right-handed alpha
Helix 45	45	C	259	266	Right-handed alpha
Helix 46	46	C	273	276	Right-handed 310
Helix 47	47	C	277	289	Right-handed alpha
Helix 48	48	C	292	310	Right-handed alpha
Helix 49	49	D	9	22	Right-handed alpha
Helix 50	50	D	32	43	Right-handed alpha
Helix 51	51	D	82	91	Right-handed alpha
Helix 52	52	D	108	117	Right-handed alpha
Helix 53	53	D	118	120	Right-handed 310
Helix 54	54	D	156	169	Right-handed alpha
Helix 55	55	D	180	192	Right-handed alpha
Helix 56	56	D	193	202	Right-handed alpha
Helix 57	57	D	204	211	Right-handed alpha
Helix 58	58	D	213	232	Right-handed alpha
Helix 59	59	D	237	248	Right-handed alpha
Helix 60	60	D	259	266	Right-handed alpha
Helix 61	61	D	273	276	Right-handed 310
Helix 62	62	D	277	289	Right-handed alpha
Helix 63	63	D	292	310	Right-handed alpha
Helix 64	64	E	9	22	Right-handed alpha
Helix 65	65	E	32	43	Right-handed alpha
Helix 66	66	E	82	91	Right-handed alpha
Helix 67	67	E	92	94	Right-handed 310
Helix 68	68	E	109	117	Right-handed alpha
Helix 69	69	E	118	120	Right-handed 310
Helix 70	70	E	156	169	Right-handed alpha
Helix 71	71	E	180	192	Right-handed alpha
Helix 72	72	E	193	202	Right-handed alpha
Helix 73	73	E	204	211	Right-handed alpha
Helix 74	74	E	213	232	Right-handed alpha
Helix 75	75	E	237	248	Right-handed alpha
Helix 76	76	E	259	266	Right-handed alpha
Helix 77	77	E	273	276	Right-handed 310
Helix 78	78	E	277	289	Right-handed alpha
Helix 79	79	E	292	310	Right-handed alpha
Helix 80	80	F	9	22	Right-handed alpha
Helix 81	81	F	32	37	Right-handed alpha
Helix 82	82	F	82	91	Right-handed alpha
Helix 83	83	F	109	117	Right-handed alpha
Helix 84	84	F	118	120	Right-handed 310
Helix 85	85	F	158	167	Right-handed alpha
Helix 86	86	F	180	192	Right-handed alpha
Helix 87	87	F	193	202	Right-handed alpha
Helix 88	88	F	204	211	Right-handed alpha
Helix 89	89	F	213	232	Right-handed alpha
Helix 90	90	F	237	248	Right-handed alpha
Helix 91	91	F	259	266	Right-handed alpha
Helix 92	92	F	273	276	Right-handed 310
Helix 93	93	F	277	289	Right-handed alpha
Helix 94	94	F	292	310	Right-handed alpha
Helix 95	95	G	9	22	Right-handed alpha
Helix 96	96	G	32	43	Right-handed alpha
Helix 97	97	G	82	91	Right-handed alpha
Helix 98	98	G	92	94	Right-handed 310
Helix 99	99	G	109	117	Right-handed alpha
Helix 100	100	G	118	120	Right-handed 310
Helix 101	101	G	156	169	Right-handed alpha
Helix 102	102	G	179	192	Right-handed alpha
Helix 103	103	G	193	202	Right-handed alpha
Helix 104	104	G	204	211	Right-handed alpha
Helix 105	105	G	213	232	Right-handed alpha
Helix 106	106	G	237	248	Right-handed alpha
Helix 107	107	G	259	266	Right-handed alpha
Helix 108	108	G	273	276	Right-handed 310
Helix 109	109	G	277	289	Right-handed alpha
Helix 110	110	G	292	310	Right-handed alpha
Helix 111	111	H	9	21	Right-handed alpha
Helix 112	112	H	82	88	Right-handed alpha
Helix 113	113	H	109	114	Right-handed alpha
Helix 114	114	H	118	120	Right-handed 310
Helix 115	115	H	156	166	Right-handed alpha
Helix 116	116	H	180	192	Right-handed alpha
Helix 117	117	H	193	202	Right-handed alpha
Helix 118	118	H	204	211	Right-handed alpha
Helix 119	119	H	213	232	Right-handed alpha
Helix 120	120	H	237	248	Right-handed alpha
Helix 121	121	H	259	266	Right-handed alpha
Helix 122	122	H	273	276	Right-handed 310
Helix 123	123	H	277	289	Right-handed alpha
Helix 124	124	H	292	310	Right-handed alpha

There are 15 sheets in PDB entry 3WFJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	25	30	parallel
Strand 3	A	2	6	parallel
Strand 4	A	73	76	parallel
Strand 5	A	100	102	parallel
Strand 6	A	122	127	parallel
Strand 7	A	147	151	anti-parallel
Strand 8	A	174	176	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	44	47	anti-parallel
Strand 3	A	138	140	parallel
Strand 4	A	132	135	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	25	30	parallel
Strand 3	B	2	6	parallel
Strand 4	B	73	76	parallel
Strand 5	B	100	102	parallel
Strand 6	B	122	127	parallel
Strand 7	B	147	151	anti-parallel
Strand 8	B	174	176	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	44	48	anti-parallel
Strand 3	B	138	141	parallel
Strand 4	B	132	135	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	25	30	parallel
Strand 3	C	2	6	parallel
Strand 4	C	73	76	parallel
Strand 5	C	100	102	parallel
Strand 6	C	122	127	parallel
Strand 7	C	147	151	anti-parallel
Strand 8	C	174	176	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	44	47	anti-parallel
Strand 3	C	138	140	parallel
Strand 4	C	132	135	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	25	30	parallel
Strand 3	D	2	6	parallel
Strand 4	D	73	76	parallel
Strand 5	D	99	102	parallel
Strand 6	D	122	127	parallel
Strand 7	D	147	151	anti-parallel
Strand 8	D	174	176	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	138	140	parallel
Strand 3	D	132	135	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	25	30	parallel
Strand 3	E	2	6	parallel
Strand 4	E	73	76	parallel
Strand 5	E	99	102	parallel
Strand 6	E	122	127	parallel
Strand 7	E	147	151	anti-parallel
Strand 8	E	174	176	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	44	47	anti-parallel
Strand 3	E	138	140	parallel
Strand 4	E	132	135	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	28	29	parallel
Strand 3	F	5	6	parallel
Strand 4	F	74	76	parallel
Strand 5	F	100	102	parallel
Strand 6	F	122	127	parallel
Strand 7	F	147	151	anti-parallel
Strand 8	F	174	176	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	135	first strand
Strand 2	F	138	140	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	25	30	parallel
Strand 3	G	2	6	parallel
Strand 4	G	73	76	parallel
Strand 5	G	99	102	parallel
Strand 6	G	122	127	parallel
Strand 7	G	147	151	anti-parallel
Strand 8	G	174	176	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	48	first strand
Strand 2	G	138	141	parallel
Strand 3	G	132	135	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	29	first strand
Strand 2	H	4	6	parallel
Strand 3	H	74	76	parallel
Strand 4	H	100	102	parallel
Strand 5	H	122	127	parallel
Strand 6	H	147	151	anti-parallel
Strand 7	H	174	176	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WFJ