Analysis of interatomic Contacts of Structural Units in PDB entry:
3WFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WFO entry

There are 3 chains in PDB entry 3WFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 448
B
 GLU 2GLU 449
C
 ASN 3ARG 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 3WFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 31Right-handed alpha
Helix 2
2
A
41 49Right-handed alpha
Helix 3
3
A
66 79Right-handed alpha
Helix 4
4
A
120 130Right-handed alpha
Helix 5
5
A
134 138Right-handed 310
Helix 6
6
A
143 148Right-handed alpha
Helix 7
7
A
161 168Right-handed alpha
Helix 8
8
A
175 182Right-handed alpha
Helix 9
9
A
184 196Right-handed alpha
Helix 10
10
A
201 211Right-handed alpha
Helix 11
11
A
212 218Right-handed 310
Helix 12
12
A
219 233Right-handed alpha
Helix 13
13
A
235 246Right-handed alpha
Helix 14
14
A
247 253Right-handed alpha
Helix 15
15
A
253 258Right-handed alpha
Helix 16
16
A
259 261Right-handed 310
Helix 17
17
A
273 290Right-handed alpha
Helix 18
18
A
290 295Right-handed alpha
Helix 19
19
A
296 302Right-handed alpha
Helix 20
20
A
313 325Right-handed alpha
Helix 21
21
A
344 360Right-handed alpha
Helix 22
22
A
363 376Right-handed alpha
Helix 23
23
A
378 389Right-handed alpha
Helix 24
24
A
393 404Right-handed alpha
Helix 25
25
A
407 422Right-handed alpha
Helix 26
26
A
425 445Right-handed alpha
Helix 27
27
B
15 20Right-handed 310
Helix 28
28
B
21 22Right-handed 310
Helix 29
29
B
23 31Right-handed alpha
Helix 30
30
B
41 49Right-handed alpha
Helix 31
31
B
66 79Right-handed alpha
Helix 32
32
B
120 130Right-handed alpha
Helix 33
33
B
134 138Right-handed 310
Helix 34
34
B
143 148Right-handed alpha
Helix 35
35
B
161 168Right-handed alpha
Helix 36
36
B
175 182Right-handed alpha
Helix 37
37
B
184 196Right-handed alpha
Helix 38
38
B
201 211Right-handed alpha
Helix 39
39
B
212 218Right-handed 310
Helix 40
40
B
219 233Right-handed alpha
Helix 41
41
B
235 246Right-handed alpha
Helix 42
42
B
247 253Right-handed alpha
Helix 43
43
B
254 261Right-handed 310
Helix 44
44
B
274 290Right-handed alpha
Helix 45
45
B
290 295Right-handed alpha
Helix 46
46
B
296 302Right-handed alpha
Helix 47
47
B
313 325Right-handed alpha
Helix 48
48
B
344 360Right-handed alpha
Helix 49
49
B
363 376Right-handed alpha
Helix 50
50
B
378 389Right-handed alpha
Helix 51
51
B
393 404Right-handed alpha
Helix 52
52
B
407 422Right-handed alpha
Helix 53
53
B
425 445Right-handed alpha
Helix 54
54
B
446 449Right-handed 310
Helix 55
55
C
15 20Right-handed alpha
Helix 56
56
C
23 31Right-handed alpha
Helix 57
57
C
41 49Right-handed alpha
Helix 58
58
C
66 79Right-handed alpha
Helix 59
59
C
120 130Right-handed alpha
Helix 60
60
C
134 138Right-handed 310
Helix 61
61
C
143 148Right-handed alpha
Helix 62
62
C
161 168Right-handed alpha
Helix 63
63
C
175 182Right-handed alpha
Helix 64
64
C
184 196Right-handed alpha
Helix 65
65
C
201 211Right-handed alpha
Helix 66
66
C
212 218Right-handed 310
Helix 67
67
C
219 233Right-handed alpha
Helix 68
68
C
235 246Right-handed alpha
Helix 69
69
C
247 253Right-handed alpha
Helix 70
70
C
253 258Right-handed alpha
Helix 71
71
C
273 290Right-handed alpha
Helix 72
72
C
290 295Right-handed alpha
Helix 73
73
C
296 302Right-handed alpha
Helix 74
74
C
313 325Right-handed alpha
Helix 75
75
C
344 360Right-handed alpha
Helix 76
76
C
363 376Right-handed alpha
Helix 77
77
C
378 389Right-handed alpha
Helix 78
78
C
393 404Right-handed alpha
Helix 79
79
C
407 422Right-handed alpha
Helix 80
80
C
425 445Right-handed alpha
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There are 5 sheets in PDB entry 3WFO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
56 63parallel
Strand 5
A
37 40anti-parallel
Strand 6
A
140 142anti-parallel
Strand 7
A
154 157anti-parallel
Strand 8
B
4 8parallel
Strand 9
A
4 8anti-parallel
Strand 10
B
155 157parallel
Strand 11
B
140 142anti-parallel
Strand 12
B
37 40anti-parallel
Strand 13
B
56 63anti-parallel
Strand 14
B
108 115parallel
Strand 15
B
98 103anti-parallel
Strand 16
B
81 84anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
199 200parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
199 200parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 84first strand
Strand 2
C
98 103anti-parallel
Strand 3
C
108 115anti-parallel
Strand 4
C
56 63parallel
Strand 5
C
37 40anti-parallel
Strand 6
C
140 142anti-parallel
Strand 7
C
156 157anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
199 200parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il