Analysis of interatomic Contacts of Structural Units in PDB entry:
3WFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WFP entry

There are 3 chains in PDB entry 3WFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 17	UNK 501
B	LEU 17	UNK 504
C	LEU 17	LYS 372

There are212 helices in PDB entry 3WFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	31	Right-handed alpha
Helix 2	2	A	41	50	Right-handed alpha
Helix 3	3	A	66	79	Right-handed alpha
Helix 4	4	A	120	130	Right-handed alpha
Helix 5	5	A	134	138	Right-handed 310
Helix 6	6	A	143	147	Right-handed alpha
Helix 7	7	A	161	168	Right-handed alpha
Helix 8	8	A	175	182	Right-handed alpha
Helix 9	9	A	184	196	Right-handed alpha
Helix 10	10	A	201	211	Right-handed alpha
Helix 11	11	A	212	218	Right-handed 310
Helix 12	12	A	219	233	Right-handed alpha
Helix 13	13	A	235	246	Right-handed alpha
Helix 14	14	A	247	253	Right-handed alpha
Helix 15	15	A	253	258	Right-handed alpha
Helix 16	16	A	273	290	Right-handed alpha
Helix 17	17	A	290	295	Right-handed alpha
Helix 18	18	A	296	303	Right-handed alpha
Helix 19	19	A	314	324	Right-handed alpha
Helix 20	20	A	344	360	Right-handed alpha
Helix 21	21	A	363	376	Right-handed alpha
Helix 22	22	A	378	389	Right-handed alpha
Helix 23	23	A	393	404	Right-handed alpha
Helix 24	24	A	407	422	Right-handed alpha
Helix 25	25	A	425	445	Right-handed alpha
Helix 26	26	A	462	466	Right-handed alpha
Helix 27	27	A	472	486	Right-handed alpha
Helix 28	28	A	492	501	Right-handed alpha
Helix 29	29	B	22	31	Right-handed alpha
Helix 30	30	B	41	49	Right-handed alpha
Helix 31	31	B	66	79	Right-handed alpha
Helix 32	32	B	120	130	Right-handed alpha
Helix 33	33	B	134	138	Right-handed 310
Helix 34	34	B	143	148	Right-handed alpha
Helix 35	35	B	161	168	Right-handed alpha
Helix 36	36	B	175	182	Right-handed alpha
Helix 37	37	B	184	196	Right-handed alpha
Helix 38	38	B	201	211	Right-handed alpha
Helix 39	39	B	212	218	Right-handed 310
Helix 40	40	B	219	233	Right-handed alpha
Helix 41	41	B	235	246	Right-handed alpha
Helix 42	42	B	247	253	Right-handed alpha
Helix 43	43	B	253	258	Right-handed alpha
Helix 44	44	B	259	261	Right-handed 310
Helix 45	45	B	273	290	Right-handed alpha
Helix 46	46	B	290	295	Right-handed alpha
Helix 47	47	B	296	302	Right-handed alpha
Helix 48	48	B	314	324	Right-handed alpha
Helix 49	49	B	344	360	Right-handed alpha
Helix 50	50	B	363	376	Right-handed alpha
Helix 51	51	B	378	389	Right-handed alpha
Helix 52	52	B	393	404	Right-handed alpha
Helix 53	53	B	407	422	Right-handed alpha
Helix 54	54	B	425	446	Right-handed alpha
Helix 55	55	B	462	466	Right-handed alpha
Helix 56	56	B	472	486	Right-handed alpha
Helix 57	57	B	492	504	Right-handed alpha
Helix 58	58	C	23	31	Right-handed alpha
Helix 59	59	C	41	49	Right-handed alpha
Helix 60	60	C	66	79	Right-handed alpha
Helix 61	61	C	120	130	Right-handed alpha
Helix 62	62	C	134	138	Right-handed 310
Helix 63	63	C	143	148	Right-handed alpha
Helix 64	64	C	161	168	Right-handed alpha
Helix 65	65	C	175	182	Right-handed alpha
Helix 66	66	C	184	196	Right-handed alpha
Helix 67	67	C	201	211	Right-handed alpha
Helix 68	68	C	212	218	Right-handed 310
Helix 69	69	C	219	233	Right-handed alpha
Helix 70	70	C	235	246	Right-handed alpha
Helix 71	71	C	247	253	Right-handed alpha
Helix 72	72	C	253	258	Right-handed alpha
Helix 73	73	C	259	261	Right-handed 310
Helix 74	74	C	273	290	Right-handed alpha
Helix 75	75	C	290	295	Right-handed alpha
Helix 76	76	C	296	302	Right-handed alpha
Helix 77	77	C	314	324	Right-handed alpha
Helix 78	78	C	344	360	Right-handed alpha
Helix 79	79	C	363	376	Right-handed alpha
Helix 80	80	C	378	389	Right-handed alpha
Helix 81	81	C	393	404	Right-handed alpha
Helix 82	82	C	407	422	Right-handed alpha
Helix 83	83	C	425	445	Right-handed alpha
Helix 84	84	D	22	31	Right-handed alpha
Helix 85	85	D	41	49	Right-handed alpha
Helix 86	86	D	66	79	Right-handed alpha
Helix 87	87	D	120	130	Right-handed alpha
Helix 88	88	D	134	138	Right-handed 310
Helix 89	89	D	143	147	Right-handed alpha
Helix 90	90	D	161	168	Right-handed alpha
Helix 91	91	D	175	182	Right-handed alpha
Helix 92	92	D	184	196	Right-handed alpha
Helix 93	93	D	201	211	Right-handed alpha
Helix 94	94	D	212	218	Right-handed 310
Helix 95	95	D	219	233	Right-handed alpha
Helix 96	96	D	235	246	Right-handed alpha
Helix 97	97	D	247	253	Right-handed alpha
Helix 98	98	D	253	258	Right-handed alpha
Helix 99	99	D	259	261	Right-handed 310
Helix 100	100	D	273	290	Right-handed alpha
Helix 101	101	D	290	295	Right-handed alpha
Helix 102	102	D	296	302	Right-handed alpha
Helix 103	103	D	314	324	Right-handed alpha
Helix 104	104	D	344	360	Right-handed alpha
Helix 105	105	D	363	376	Right-handed alpha
Helix 106	106	D	378	389	Right-handed alpha
Helix 107	107	D	393	404	Right-handed alpha
Helix 108	108	D	407	422	Right-handed alpha
Helix 109	109	D	425	445	Right-handed alpha
Helix 110	110	E	22	31	Right-handed alpha
Helix 111	111	E	41	49	Right-handed alpha
Helix 112	112	E	66	79	Right-handed alpha
Helix 113	113	E	120	130	Right-handed alpha
Helix 114	114	E	134	138	Right-handed 310
Helix 115	115	E	143	148	Right-handed alpha
Helix 116	116	E	161	168	Right-handed alpha
Helix 117	117	E	175	182	Right-handed alpha
Helix 118	118	E	184	196	Right-handed alpha
Helix 119	119	E	201	211	Right-handed alpha
Helix 120	120	E	212	218	Right-handed 310
Helix 121	121	E	219	233	Right-handed alpha
Helix 122	122	E	235	246	Right-handed alpha
Helix 123	123	E	247	253	Right-handed alpha
Helix 124	124	E	253	258	Right-handed alpha
Helix 125	125	E	259	261	Right-handed 310
Helix 126	126	E	273	290	Right-handed alpha
Helix 127	127	E	290	295	Right-handed alpha
Helix 128	128	E	296	302	Right-handed alpha
Helix 129	129	E	314	324	Right-handed alpha
Helix 130	130	E	344	360	Right-handed alpha
Helix 131	131	E	363	376	Right-handed alpha
Helix 132	132	E	378	389	Right-handed alpha
Helix 133	133	E	393	404	Right-handed alpha
Helix 134	134	E	407	422	Right-handed alpha
Helix 135	135	E	425	445	Right-handed alpha
Helix 136	136	F	22	31	Right-handed alpha
Helix 137	137	F	41	48	Right-handed alpha
Helix 138	138	F	66	79	Right-handed alpha
Helix 139	139	F	120	130	Right-handed alpha
Helix 140	140	F	134	138	Right-handed 310
Helix 141	141	F	143	148	Right-handed alpha
Helix 142	142	F	161	168	Right-handed alpha
Helix 143	143	F	175	182	Right-handed alpha
Helix 144	144	F	184	196	Right-handed alpha
Helix 145	145	F	201	211	Right-handed alpha
Helix 146	146	F	212	218	Right-handed 310
Helix 147	147	F	219	233	Right-handed alpha
Helix 148	148	F	235	246	Right-handed alpha
Helix 149	149	F	247	253	Right-handed alpha
Helix 150	150	F	253	259	Right-handed alpha
Helix 151	151	F	273	290	Right-handed alpha
Helix 152	152	F	290	295	Right-handed alpha
Helix 153	153	F	296	302	Right-handed alpha
Helix 154	154	F	314	324	Right-handed alpha
Helix 155	155	F	344	360	Right-handed alpha
Helix 156	156	F	363	376	Right-handed alpha
Helix 157	157	F	378	389	Right-handed alpha
Helix 158	158	F	393	404	Right-handed alpha
Helix 159	159	F	407	422	Right-handed alpha
Helix 160	160	F	425	445	Right-handed alpha
Helix 161	161	G	22	31	Right-handed alpha
Helix 162	162	G	41	49	Right-handed alpha
Helix 163	163	G	66	79	Right-handed alpha
Helix 164	164	G	120	130	Right-handed alpha
Helix 165	165	G	134	138	Right-handed 310
Helix 166	166	G	143	148	Right-handed alpha
Helix 167	167	G	161	168	Right-handed alpha
Helix 168	168	G	175	182	Right-handed alpha
Helix 169	169	G	184	196	Right-handed alpha
Helix 170	170	G	201	211	Right-handed alpha
Helix 171	171	G	212	218	Right-handed 310
Helix 172	172	G	219	233	Right-handed alpha
Helix 173	173	G	235	246	Right-handed alpha
Helix 174	174	G	247	253	Right-handed alpha
Helix 175	175	G	253	258	Right-handed alpha
Helix 176	176	G	259	261	Right-handed 310
Helix 177	177	G	273	290	Right-handed alpha
Helix 178	178	G	290	295	Right-handed alpha
Helix 179	179	G	296	302	Right-handed alpha
Helix 180	180	G	314	324	Right-handed alpha
Helix 181	181	G	347	360	Right-handed alpha
Helix 182	182	G	363	376	Right-handed alpha
Helix 183	183	G	378	389	Right-handed alpha
Helix 184	184	G	393	404	Right-handed alpha
Helix 185	185	G	407	422	Right-handed alpha
Helix 186	186	G	425	445	Right-handed alpha
Helix 187	187	H	22	31	Right-handed alpha
Helix 188	188	H	41	49	Right-handed alpha
Helix 189	189	H	66	79	Right-handed alpha
Helix 190	190	H	120	130	Right-handed alpha
Helix 191	191	H	134	138	Right-handed 310
Helix 192	192	H	143	148	Right-handed alpha
Helix 193	193	H	161	168	Right-handed alpha
Helix 194	194	H	175	182	Right-handed alpha
Helix 195	195	H	184	196	Right-handed alpha
Helix 196	196	H	201	211	Right-handed alpha
Helix 197	197	H	212	218	Right-handed 310
Helix 198	198	H	219	233	Right-handed alpha
Helix 199	199	H	235	246	Right-handed alpha
Helix 200	200	H	247	253	Right-handed alpha
Helix 201	201	H	253	258	Right-handed alpha
Helix 202	202	H	259	261	Right-handed 310
Helix 203	203	H	273	290	Right-handed alpha
Helix 204	204	H	290	295	Right-handed alpha
Helix 205	205	H	296	302	Right-handed alpha
Helix 206	206	H	314	324	Right-handed alpha
Helix 207	207	H	344	360	Right-handed alpha
Helix 208	208	H	363	376	Right-handed alpha
Helix 209	209	H	378	389	Right-handed alpha
Helix 210	210	H	393	404	Right-handed alpha
Helix 211	211	H	407	422	Right-handed alpha
Helix 212	212	H	425	445	Right-handed alpha

There are 24 sheets in PDB entry 3WFP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	98	104	anti-parallel
Strand 3	A	107	115	anti-parallel
Strand 4	A	56	63	parallel
Strand 5	A	37	40	anti-parallel
Strand 6	A	140	142	anti-parallel
Strand 7	A	156	157	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	199	200	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	312	313	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	97	103	anti-parallel
Strand 3	B	108	115	anti-parallel
Strand 4	B	56	63	parallel
Strand 5	B	37	40	anti-parallel
Strand 6	B	140	142	anti-parallel
Strand 7	B	156	157	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	199	200	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	312	313	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	98	103	anti-parallel
Strand 3	C	108	115	anti-parallel
Strand 4	C	56	63	parallel
Strand 5	C	37	40	anti-parallel
Strand 6	C	140	142	anti-parallel
Strand 7	C	156	157	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	199	200	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	312	313	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	85	first strand
Strand 2	D	97	103	anti-parallel
Strand 3	D	108	115	anti-parallel
Strand 4	D	56	63	parallel
Strand 5	D	37	40	anti-parallel
Strand 6	D	140	142	anti-parallel
Strand 7	D	156	157	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	199	200	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	312	313	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	85	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	107	115	anti-parallel
Strand 4	E	56	63	parallel
Strand 5	E	37	40	anti-parallel
Strand 6	E	140	142	anti-parallel
Strand 7	E	156	157	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	171	first strand
Strand 2	E	199	200	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	308	first strand
Strand 2	E	312	313	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	84	first strand
Strand 2	F	98	103	anti-parallel
Strand 3	F	108	115	anti-parallel
Strand 4	F	56	63	parallel
Strand 5	F	37	40	anti-parallel
Strand 6	F	140	142	anti-parallel
Strand 7	F	156	157	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	199	200	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	308	first strand
Strand 2	F	312	313	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	85	first strand
Strand 2	G	97	103	anti-parallel
Strand 3	G	108	115	anti-parallel
Strand 4	G	56	63	parallel
Strand 5	G	37	40	anti-parallel
Strand 6	G	140	142	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	171	first strand
Strand 2	G	199	200	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	312	313	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	85	first strand
Strand 2	H	97	103	anti-parallel
Strand 3	H	108	115	anti-parallel
Strand 4	H	56	63	parallel
Strand 5	H	37	40	anti-parallel
Strand 6	H	140	142	anti-parallel
Strand 7	H	156	157	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	171	first strand
Strand 2	H	199	200	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	307	308	first strand
Strand 2	H	312	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WFP