Analysis of interatomic Contacts of Structural Units in PDB entry:
3WHQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WHQ entry

There are 2 chains in PDB entry 3WHQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 37LYS 396
B
 THR 403ARG 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3WHQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 66Right-handed alpha
Helix 2
2
A
69 85Right-handed alpha
Helix 3
3
A
134 139Right-handed alpha
Helix 4
4
A
140 145Right-handed 310
Helix 5
5
A
149 162Right-handed alpha
Helix 6
6
A
165 180Right-handed alpha
Helix 7
7
A
184 194Right-handed alpha
Helix 8
8
A
194 200Right-handed alpha
Helix 9
9
A
203 208Right-handed alpha
Helix 10
10
A
209 212Right-handed 310
Helix 11
11
A
222 236Right-handed alpha
Helix 12
12
A
237 242Right-handed alpha
Helix 13
13
A
242 256Right-handed alpha
Helix 14
14
A
261 268Right-handed alpha
Helix 15
15
A
293 307Right-handed alpha
Helix 16
16
A
308 313Right-handed 310
Helix 17
17
A
317 339Right-handed alpha
Helix 18
18
A
348 354Right-handed alpha
Helix 19
19
A
354 363Right-handed alpha
Helix 20
20
A
378 383Right-handed 310
Helix 21
21
B
441 446Right-handed 310
Helix 22
22
B
485 487Right-handed 310
Helix 23
23
B
488 501Right-handed alpha
Helix 24
24
B
506 513Right-handed alpha
Helix 25
25
B
531 541Right-handed alpha
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There are 4 sheets in PDB entry 3WHQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
B
566 570anti-parallel
Strand 3
B
556 561anti-parallel
Strand 4
B
476 482anti-parallel
Strand 5
B
469 473anti-parallel
Strand 6
A
283 287anti-parallel
Strand 7
A
276 280anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
B
415 421anti-parallel
Strand 5
B
404 410anti-parallel
Strand 6
A
47 51anti-parallel
Strand 7
B
578 581anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 520first strand
Strand 2
B
523 526anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il