Analysis of interatomic Contacts of Structural Units in PDB entry:
3WJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WJ9 entry

There are 2 chains in PDB entry 3WJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	ASN 412
B	SER 1	ASN 412

There is 1 helix in PDB entry 3WJ9. Click on helix number for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	23	Right-handed 310

There are 17 sheets in PDB entry 3WJ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	6	11	anti-parallel
Strand 3	A	401	406	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	42	first strand
Strand 2	A	48	53	anti-parallel
Strand 3	A	57	61	anti-parallel
Strand 4	A	67	71	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	87	92	anti-parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	116	120	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	138	143	anti-parallel
Strand 3	A	146	151	anti-parallel
Strand 4	A	161	162	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	206	212	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	228	233	anti-parallel
Strand 3	A	242	247	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	276	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	292	297	anti-parallel
Strand 4	A	303	310	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	335	340	anti-parallel
Strand 4	A	346	352	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	382	387	anti-parallel
Strand 4	A	392	397	anti-parallel
Strand 5	B	392	397	anti-parallel
Strand 6	B	382	387	anti-parallel
Strand 7	B	367	372	anti-parallel
Strand 8	B	358	361	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	6	11	anti-parallel
Strand 3	B	401	406	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	57	61	anti-parallel
Strand 4	B	67	71	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	81	first strand
Strand 2	B	87	92	anti-parallel
Strand 3	B	106	110	anti-parallel
Strand 4	B	116	120	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	138	143	anti-parallel
Strand 3	B	146	151	anti-parallel
Strand 4	B	161	162	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	194	199	anti-parallel
Strand 4	B	208	210	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	243	245	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	276	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	292	297	anti-parallel
Strand 4	B	303	310	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	317	first strand
Strand 2	B	323	327	anti-parallel
Strand 3	B	336	340	anti-parallel
Strand 4	B	346	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WJ9