Analysis of interatomic Contacts of Structural Units in PDB entry:
3WKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WKF entry

There is 1 chain in PDB entry 3WKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3VAL 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3WKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 26Right-handed alpha
Helix 2
2
A
26 35Right-handed alpha
Helix 3
3
A
61 79Right-handed alpha
Helix 4
4
A
80 98Right-handed alpha
Helix 5
5
A
123 141Right-handed alpha
Helix 6
6
A
142 160Right-handed alpha
Helix 7
7
A
195 212Right-handed alpha
Helix 8
8
A
214 232Right-handed alpha
Helix 9
9
A
257 275Right-handed alpha
Helix 10
10
A
279 298Right-handed alpha
Helix 11
11
A
321 339Right-handed alpha
Helix 12
12
A
341 357Right-handed alpha
Helix 13
13
A
388 407Right-handed alpha
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There are 5 sheets in PDB entry 3WKF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
109 110anti-parallel
Strand 3
A
116 118anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
171 172anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
243 244anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
308 309anti-parallel
Strand 3
A
315 316anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
369 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il