Analysis of interatomic Contacts of Structural Units in PDB entry:
3WKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WKR entry

There are 12 chains in PDB entry 3WKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 18HIS 233
A
 SER 235LYS 396
B
 ILE 18HIS 233
B
 SER 235LYS 396
C
 ILE 34GLU 101
D
 SER 35PHE 102
E
 ILE 18HIS 233
E
 SER 235LYS 396
F
 ILE 18HIS 233
F
 SER 235LYS 396
G
 ILE 34PHE 102
H
 SER 35PHE 102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 3WKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 42Right-handed 310
Helix 2
2
A
47 57Right-handed alpha
Helix 3
3
A
79 90Right-handed alpha
Helix 4
4
A
100 112Right-handed alpha
Helix 5
5
A
126 136Right-handed alpha
Helix 6
6
A
157 168Right-handed alpha
Helix 7
7
A
190 202Right-handed alpha
Helix 8
8
A
232 236Right-handed alpha
Helix 9
9
A
251 256Right-handed alpha
Helix 10
10
A
276 285Right-handed alpha
Helix 11
11
A
285 293Right-handed alpha
Helix 12
12
A
296 311Right-handed alpha
Helix 13
13
A
332 341Right-handed alpha
Helix 14
14
A
344 346Right-handed 310
Helix 15
15
A
347 355Right-handed alpha
Helix 16
16
A
377 395Right-handed alpha
Helix 17
17
B
20 25Right-handed alpha
Helix 18
18
B
38 42Right-handed 310
Helix 19
19
B
47 57Right-handed alpha
Helix 20
20
B
78 91Right-handed alpha
Helix 21
21
B
100 112Right-handed alpha
Helix 22
22
B
127 136Right-handed alpha
Helix 23
23
B
157 168Right-handed alpha
Helix 24
24
B
190 201Right-handed alpha
Helix 25
25
B
251 256Right-handed alpha
Helix 26
26
B
276 293Right-handed alpha
Helix 27
27
B
296 311Right-handed alpha
Helix 28
28
B
332 340Right-handed alpha
Helix 29
29
B
344 346Right-handed 310
Helix 30
30
B
347 355Right-handed alpha
Helix 31
31
B
377 395Right-handed alpha
Helix 32
32
C
35 39Right-handed 310
Helix 33
33
C
45 59Right-handed alpha
Helix 34
34
C
60 66Right-handed alpha
Helix 35
35
C
73 96Right-handed alpha
Helix 36
36
C
97 99Right-handed 310
Helix 37
37
D
45 59Right-handed alpha
Helix 38
38
D
60 66Right-handed alpha
Helix 39
39
D
73 97Right-handed alpha
Helix 40
40
E
41 45Right-handed 310
Helix 41
41
E
47 57Right-handed alpha
Helix 42
42
E
78 89Right-handed alpha
Helix 43
43
E
100 112Right-handed alpha
Helix 44
44
E
127 136Right-handed alpha
Helix 45
45
E
157 168Right-handed alpha
Helix 46
46
E
190 202Right-handed alpha
Helix 47
47
E
232 236Right-handed alpha
Helix 48
48
E
251 256Right-handed alpha
Helix 49
49
E
276 285Right-handed alpha
Helix 50
50
E
285 293Right-handed alpha
Helix 51
51
E
295 311Right-handed alpha
Helix 52
52
E
332 341Right-handed alpha
Helix 53
53
E
344 346Right-handed 310
Helix 54
54
E
347 355Right-handed alpha
Helix 55
55
E
377 395Right-handed alpha
Helix 56
56
F
20 25Right-handed alpha
Helix 57
57
F
38 43Right-handed alpha
Helix 58
58
F
47 57Right-handed alpha
Helix 59
59
F
78 90Right-handed alpha
Helix 60
60
F
100 112Right-handed alpha
Helix 61
61
F
127 136Right-handed alpha
Helix 62
62
F
157 170Right-handed alpha
Helix 63
63
F
190 201Right-handed alpha
Helix 64
64
F
251 256Right-handed alpha
Helix 65
65
F
276 285Right-handed alpha
Helix 66
66
F
285 293Right-handed alpha
Helix 67
67
F
295 311Right-handed alpha
Helix 68
68
F
332 340Right-handed alpha
Helix 69
69
F
344 346Right-handed 310
Helix 70
70
F
347 356Right-handed alpha
Helix 71
71
F
377 395Right-handed alpha
Helix 72
72
G
35 39Right-handed 310
Helix 73
73
G
45 60Right-handed alpha
Helix 74
74
G
60 66Right-handed alpha
Helix 75
75
G
74 96Right-handed alpha
Helix 76
76
G
97 99Right-handed 310
Helix 77
77
H
35 39Right-handed 310
Helix 78
78
H
45 59Right-handed alpha
Helix 79
79
H
60 66Right-handed alpha
Helix 80
80
H
73 96Right-handed alpha
Helix 81
81
H
97 99Right-handed 310
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There are 18 sheets in PDB entry 3WKR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
358 359parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
243 247anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
205 208parallel
Strand 5
A
173 179parallel
Strand 6
A
118 122parallel
Strand 7
A
139 143parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
153 154anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 318first strand
Strand 2
A
327 331anti-parallel
Strand 3
A
368 372anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
358 359parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
243 247anti-parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
205 208parallel
Strand 5
B
173 179parallel
Strand 6
B
118 122parallel
Strand 7
B
139 143parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
153 154anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 318first strand
Strand 2
B
328 331anti-parallel
Strand 3
B
368 371anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
D
42 43anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 36first strand
Strand 2
E
358 359parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 98first strand
Strand 2
E
243 247anti-parallel
Strand 3
E
227 231anti-parallel
Strand 4
E
205 208parallel
Strand 5
E
173 179parallel
Strand 6
E
118 122parallel
Strand 7
E
139 143parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 147first strand
Strand 2
E
153 154anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
316 318first strand
Strand 2
E
328 331anti-parallel
Strand 3
E
368 371anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 36first strand
Strand 2
F
358 359parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
94 98first strand
Strand 2
F
243 247anti-parallel
Strand 3
F
227 231anti-parallel
Strand 4
F
205 208parallel
Strand 5
F
173 179parallel
Strand 6
F
118 122parallel
Strand 7
F
139 143parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
145 147first strand
Strand 2
F
153 154anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
316 318first strand
Strand 2
F
328 331anti-parallel
Strand 3
F
368 371anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
42 43first strand
Strand 2
H
71 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il