Analysis of interatomic Contacts of Structural Units in PDB entry:
3WKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WKY entry

There are 2 chains in PDB entry 3WKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8CYS 687
B
 ASP 8CYS 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 3WKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 13Right-handed alpha
Helix 2
2
A
14 16Right-handed 310
Helix 3
3
A
21 30Right-handed alpha
Helix 4
4
A
50 55Right-handed alpha
Helix 5
5
A
59 63Right-handed 310
Helix 6
6
A
73 90Right-handed alpha
Helix 7
7
A
92 104Right-handed alpha
Helix 8
8
A
105 107Right-handed 310
Helix 9
9
A
108 123Right-handed alpha
Helix 10
10
A
127 131Right-handed 310
Helix 11
11
A
133 138Right-handed alpha
Helix 12
12
A
139 142Right-handed 310
Helix 13
13
A
144 161Right-handed alpha
Helix 14
14
A
171 175Right-handed 310
Helix 15
15
A
177 185Right-handed 310
Helix 16
16
A
186 191Right-handed alpha
Helix 17
17
A
192 206Right-handed alpha
Helix 18
18
A
217 240Right-handed alpha
Helix 19
19
A
287 291Right-handed 310
Helix 20
20
A
293 311Right-handed alpha
Helix 21
21
A
333 344Right-handed alpha
Helix 22
22
A
349 354Right-handed alpha
Helix 23
23
A
355 366Right-handed alpha
Helix 24
24
A
379 383Right-handed 310
Helix 25
25
A
386 389Right-handed 310
Helix 26
26
A
390 410Right-handed alpha
Helix 27
27
A
415 420Right-handed alpha
Helix 28
28
A
458 460Right-handed 310
Helix 29
29
A
519 524Right-handed alpha
Helix 30
30
A
550 552Right-handed 310
Helix 31
31
A
575 579Right-handed 310
Helix 32
32
A
644 651Right-handed alpha
Helix 33
33
A
667 672Right-handed 310
Helix 34
34
B
9 13Right-handed alpha
Helix 35
35
B
14 16Right-handed 310
Helix 36
36
B
21 30Right-handed alpha
Helix 37
37
B
50 55Right-handed alpha
Helix 38
38
B
59 63Right-handed 310
Helix 39
39
B
73 89Right-handed alpha
Helix 40
40
B
92 104Right-handed alpha
Helix 41
41
B
105 107Right-handed 310
Helix 42
42
B
108 123Right-handed alpha
Helix 43
43
B
127 131Right-handed 310
Helix 44
44
B
133 138Right-handed alpha
Helix 45
45
B
139 142Right-handed 310
Helix 46
46
B
144 161Right-handed alpha
Helix 47
47
B
171 175Right-handed 310
Helix 48
48
B
177 185Right-handed 310
Helix 49
49
B
186 191Right-handed alpha
Helix 50
50
B
192 206Right-handed alpha
Helix 51
51
B
217 240Right-handed alpha
Helix 52
52
B
287 291Right-handed 310
Helix 53
53
B
293 311Right-handed alpha
Helix 54
54
B
333 344Right-handed alpha
Helix 55
55
B
349 354Right-handed alpha
Helix 56
56
B
355 366Right-handed alpha
Helix 57
57
B
379 383Right-handed 310
Helix 58
58
B
386 389Right-handed 310
Helix 59
59
B
390 410Right-handed alpha
Helix 60
60
B
415 420Right-handed alpha
Helix 61
61
B
458 460Right-handed 310
Helix 62
62
B
519 524Right-handed alpha
Helix 63
63
B
550 552Right-handed 310
Helix 64
64
B
575 579Right-handed 310
Helix 65
65
B
644 651Right-handed alpha
Helix 66
66
B
667 672Right-handed 310
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There are 8 sheets in PDB entry 3WKY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
46 47anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
472 481parallel
Strand 3
A
445 456anti-parallel
Strand 4
A
655 664parallel
Strand 5
A
588 598anti-parallel
Strand 6
A
501 509anti-parallel
Strand 7
A
528 534anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
320 322anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 432first strand
Strand 2
A
485 493anti-parallel
Strand 3
A
541 548anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
45 47anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
472 481parallel
Strand 3
B
445 456anti-parallel
Strand 4
B
655 664parallel
Strand 5
B
588 598anti-parallel
Strand 6
B
501 509anti-parallel
Strand 7
B
528 534anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
320 322anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 432first strand
Strand 2
B
485 493anti-parallel
Strand 3
B
541 548anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il