Analysis of interatomic Contacts of Structural Units in PDB entry:
3WMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WMM entry

There are 6 chains in PDB entry 3WMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 17	THR 333
L	ALA 2	TRP 281
M	PRO 2	ALA 320
H	SER 2	LEU 259
A	PHE 2	LYS 61
B	THR 7	ARG 43

There are123 helices in PDB entry 3WMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	C	45	56	Right-handed alpha
Helix 2	2	C	71	76	Right-handed alpha
Helix 3	3	C	86	101	Right-handed alpha
Helix 4	4	C	106	110	Right-handed 310
Helix 5	5	C	121	141	Right-handed alpha
Helix 6	6	C	141	146	Right-handed alpha
Helix 7	7	C	151	157	Right-handed alpha
Helix 8	8	C	187	191	Right-handed 310
Helix 9	9	C	225	243	Right-handed alpha
Helix 10	10	C	246	250	Right-handed 310
Helix 11	11	C	252	256	Right-handed 310
Helix 12	12	C	263	282	Right-handed alpha
Helix 13	13	C	285	290	Right-handed 310
Helix 14	14	C	292	296	Right-handed 310
Helix 15	15	C	306	312	Right-handed alpha
Helix 16	16	C	316	320	Right-handed 310
Helix 17	17	C	323	331	Right-handed 310
Helix 18	18	L	7	11	Right-handed 310
Helix 19	19	L	19	24	Right-handed alpha
Helix 20	20	L	32	57	Right-handed alpha
Helix 21	21	L	92	121	Right-handed alpha
Helix 22	22	L	124	141	Right-handed alpha
Helix 23	23	L	142	149	Right-handed alpha
Helix 24	24	L	150	154	Right-handed 310
Helix 25	25	L	160	172	Right-handed alpha
Helix 26	26	L	173	174	Right-handed 310
Helix 27	27	L	175	178	Right-handed 310
Helix 28	28	L	179	208	Right-handed alpha
Helix 29	29	L	217	229	Right-handed alpha
Helix 30	30	L	234	260	Right-handed alpha
Helix 31	31	L	267	272	Right-handed alpha
Helix 32	32	L	272	277	Right-handed alpha
Helix 33	33	M	37	42	Right-handed alpha
Helix 34	34	M	54	79	Right-handed alpha
Helix 35	35	M	82	90	Right-handed alpha
Helix 36	36	M	112	138	Right-handed alpha
Helix 37	37	M	139	141	Right-handed 310
Helix 38	38	M	144	160	Right-handed alpha
Helix 39	39	M	164	169	Right-handed alpha
Helix 40	40	M	180	193	Right-handed alpha
Helix 41	41	M	199	226	Right-handed alpha
Helix 42	42	M	227	230	Right-handed 310
Helix 43	43	M	233	240	Right-handed alpha
Helix 44	44	M	242	257	Right-handed alpha
Helix 45	45	M	261	287	Right-handed alpha
Helix 46	46	M	293	301	Right-handed alpha
Helix 47	47	M	315	320	Right-handed alpha
Helix 48	48	H	10	34	Right-handed alpha
Helix 49	49	H	198	200	Right-handed 310
Helix 50	50	H	232	250	Right-handed alpha
Helix 51	51	H	251	256	Right-handed alpha
Helix 52	52	A	4	9	Right-handed alpha
Helix 53	53	A	10	14	Right-handed 310
Helix 54	54	A	16	42	Right-handed alpha
Helix 55	55	B	10	43	Right-handed alpha
Helix 56	56	D	4	9	Right-handed alpha
Helix 57	57	D	10	14	Right-handed 310
Helix 58	58	D	16	42	Right-handed alpha
Helix 59	59	D	53	58	Right-handed alpha
Helix 60	60	E	10	42	Right-handed alpha
Helix 61	61	F	6	14	Right-handed 310
Helix 62	62	F	18	42	Right-handed alpha
Helix 63	63	F	54	61	Right-handed alpha
Helix 64	64	G	10	43	Right-handed alpha
Helix 65	65	I	4	9	Right-handed alpha
Helix 66	66	I	10	14	Right-handed 310
Helix 67	67	I	20	42	Right-handed alpha
Helix 68	68	J	10	43	Right-handed alpha
Helix 69	69	K	4	9	Right-handed alpha
Helix 70	70	K	10	14	Right-handed 310
Helix 71	71	K	16	41	Right-handed alpha
Helix 72	72	K	54	61	Right-handed alpha
Helix 73	73	N	10	43	Right-handed alpha
Helix 74	74	O	3	9	Right-handed 310
Helix 75	75	O	10	15	Right-handed alpha
Helix 76	76	O	16	42	Right-handed alpha
Helix 77	77	O	53	58	Right-handed alpha
Helix 78	78	P	11	43	Right-handed alpha
Helix 79	79	Q	4	9	Right-handed alpha
Helix 80	80	Q	10	14	Right-handed 310
Helix 81	81	Q	16	41	Right-handed alpha
Helix 82	82	Q	56	61	Right-handed alpha
Helix 83	83	R	10	43	Right-handed alpha
Helix 84	84	S	3	14	Right-handed 310
Helix 85	85	S	16	42	Right-handed alpha
Helix 86	86	S	55	61	Right-handed alpha
Helix 87	87	T	10	43	Right-handed alpha
Helix 88	88	U	3	14	Right-handed 310
Helix 89	89	U	16	42	Right-handed alpha
Helix 90	90	U	56	61	Right-handed alpha
Helix 91	91	V	10	43	Right-handed alpha
Helix 92	92	W	2	14	Right-handed 310
Helix 93	93	W	16	40	Right-handed alpha
Helix 94	94	W	56	61	Right-handed alpha
Helix 95	95	X	10	43	Right-handed alpha
Helix 96	96	Y	7	14	Right-handed 310
Helix 97	97	Y	16	42	Right-handed alpha
Helix 98	98	Y	56	61	Right-handed alpha
Helix 99	99	Z	10	42	Right-handed alpha
Helix 100	100	1	3	9	Right-handed 310
Helix 101	101	1	10	15	Right-handed alpha
Helix 102	102	1	16	42	Right-handed alpha
Helix 103	103	2	10	43	Right-handed alpha
Helix 104	104	3	3	14	Right-handed 310
Helix 105	105	3	16	41	Right-handed alpha
Helix 106	106	3	54	60	Right-handed alpha
Helix 107	107	4	11	43	Right-handed alpha
Helix 108	108	5	3	9	Right-handed 310
Helix 109	109	5	10	15	Right-handed alpha
Helix 110	110	5	16	42	Right-handed alpha
Helix 111	111	5	53	61	Right-handed alpha
Helix 112	112	6	10	30	Right-handed alpha
Helix 113	113	6	30	43	Right-handed alpha
Helix 114	114	7	4	9	Right-handed alpha
Helix 115	115	7	10	13	Right-handed 310
Helix 116	116	7	16	42	Right-handed alpha
Helix 117	117	7	54	60	Right-handed alpha
Helix 118	118	8	10	43	Right-handed alpha
Helix 119	119	9	6	13	Right-handed 310
Helix 120	120	9	16	42	Right-handed alpha
Helix 121	121	9	45	49	Right-handed 310
Helix 122	122	9	54	59	Right-handed alpha
Helix 123	123	0	10	43	Right-handed alpha

There are 8 sheets in PDB entry 3WMM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	41	42	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	27	first strand
Strand 2	L	30	31	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	14	first strand
Strand 2	H	143	144	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	94	95	first strand
Strand 2	M	177	178	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	76	78	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	91	first strand
Strand 2	H	100	102	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	165	173	anti-parallel
Strand 3	H	155	156	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	165	173	anti-parallel
Strand 3	H	179	186	anti-parallel
Strand 4	H	192	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WMM