Analysis of interatomic Contacts of Structural Units in PDB entry:
3WMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WMS entry

There is 1 chain in PDB entry 3WMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32TRP 716
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3WMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 56Right-handed 310
Helix 2
2
A
60 64Right-handed 310
Helix 3
3
A
66 70Right-handed 310
Helix 4
4
A
84 94Right-handed alpha
Helix 5
5
A
95 100Right-handed alpha
Helix 6
6
A
145 159Right-handed alpha
Helix 7
7
A
216 222Right-handed alpha
Helix 8
8
A
235 252Right-handed alpha
Helix 9
9
A
261 265Right-handed 310
Helix 10
10
A
266 279Right-handed alpha
Helix 11
11
A
298 308Right-handed alpha
Helix 12
12
A
314 326Right-handed alpha
Helix 13
13
A
331 346Right-handed alpha
Helix 14
14
A
348 351Right-handed 310
Helix 15
15
A
371 384Right-handed alpha
Helix 16
16
A
393 397Right-handed 310
Helix 17
17
A
404 408Right-handed 310
Helix 18
18
A
417 427Right-handed alpha
Helix 19
19
A
428 433Right-handed alpha
Helix 20
20
A
433 439Right-handed alpha
Helix 21
21
A
504 506Right-handed 310
Helix 22
22
A
642 646Right-handed 310
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There are 14 sheets in PDB entry 3WMS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
285 288parallel
Strand 3
A
256 259parallel
Strand 4
A
162 167parallel
Strand 5
A
104 107parallel
Strand 6
A
48 51parallel
Strand 7
A
387 391parallel
Strand 8
A
353 354parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
133 139anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
123 125anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
228 230anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
193 196anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 446first strand
Strand 2
A
450 457anti-parallel
Strand 3
A
460 467anti-parallel
Strand 4
A
519 524anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
512 514anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
A
508 509anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
501 503anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 537first strand
Strand 2
A
546 552anti-parallel
Strand 3
A
580 584anti-parallel
Strand 4
A
573 576anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 541first strand
Strand 2
A
608 613parallel
Strand 3
A
591 598anti-parallel
Strand 4
A
560 563anti-parallel
Strand 5
A
566 568anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 675first strand
Strand 2
A
618 626anti-parallel
Strand 3
A
710 715parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 640first strand
Strand 2
A
679 687anti-parallel
Strand 3
A
693 694anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 640first strand
Strand 2
A
679 687anti-parallel
Strand 3
A
700 703anti-parallel
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