Analysis of interatomic Contacts of Structural Units in PDB entry:
3WMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WMT entry

There are 2 chains in PDB entry 3WMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 36VAL 540
B
 SER 36VAL 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 3WMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 45Right-handed alpha
Helix 2
2
A
46 48Right-handed 310
Helix 3
3
A
73 77Right-handed 310
Helix 4
4
A
131 140Right-handed alpha
Helix 5
5
A
157 161Right-handed 310
Helix 6
6
A
163 172Right-handed alpha
Helix 7
7
A
172 190Right-handed alpha
Helix 8
8
A
203 216Right-handed alpha
Helix 9
9
A
231 247Right-handed alpha
Helix 10
10
A
256 272Right-handed alpha
Helix 11
11
A
273 276Right-handed 310
Helix 12
12
A
284 288Right-handed 310
Helix 13
13
A
291 296Right-handed 310
Helix 14
14
A
302 306Right-handed 310
Helix 15
15
A
310 321Right-handed alpha
Helix 16
16
A
327 329Right-handed 310
Helix 17
17
A
340 348Right-handed alpha
Helix 18
18
A
354 364Right-handed alpha
Helix 19
19
A
372 376Right-handed 310
Helix 20
20
A
377 388Right-handed alpha
Helix 21
21
A
389 392Right-handed 310
Helix 22
22
A
399 405Right-handed alpha
Helix 23
23
A
421 437Right-handed alpha
Helix 24
24
A
439 444Right-handed alpha
Helix 25
25
A
470 474Right-handed 310
Helix 26
26
A
478 481Right-handed 310
Helix 27
27
A
482 494Right-handed alpha
Helix 28
28
A
533 535Right-handed 310
Helix 29
29
B
37 43Right-handed alpha
Helix 30
30
B
44 47Right-handed 310
Helix 31
31
B
131 140Right-handed alpha
Helix 32
32
B
157 161Right-handed 310
Helix 33
33
B
163 172Right-handed alpha
Helix 34
34
B
172 190Right-handed alpha
Helix 35
35
B
203 216Right-handed alpha
Helix 36
36
B
231 247Right-handed alpha
Helix 37
37
B
256 272Right-handed alpha
Helix 38
38
B
273 276Right-handed 310
Helix 39
39
B
284 288Right-handed 310
Helix 40
40
B
291 296Right-handed 310
Helix 41
41
B
302 306Right-handed 310
Helix 42
42
B
310 321Right-handed alpha
Helix 43
43
B
327 329Right-handed 310
Helix 44
44
B
340 348Right-handed alpha
Helix 45
45
B
354 364Right-handed alpha
Helix 46
46
B
372 376Right-handed 310
Helix 47
47
B
377 388Right-handed alpha
Helix 48
48
B
389 392Right-handed 310
Helix 49
49
B
399 405Right-handed alpha
Helix 50
50
B
422 437Right-handed alpha
Helix 51
51
B
439 444Right-handed alpha
Helix 52
52
B
470 474Right-handed 310
Helix 53
53
B
478 481Right-handed 310
Helix 54
54
B
482 494Right-handed alpha
Helix 55
55
B
533 535Right-handed 310
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There are 8 sheets in PDB entry 3WMT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 61first strand
Strand 2
A
89 99anti-parallel
Strand 3
A
102 111anti-parallel
Strand 4
A
144 148anti-parallel
Strand 5
A
118 120parallel
Strand 6
A
197 202parallel
Strand 7
A
222 226parallel
Strand 8
A
408 414parallel
Strand 9
A
447 452parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 333anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 506first strand
Strand 2
A
509 517anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 525first strand
Strand 2
A
537 540anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 61first strand
Strand 2
B
89 99anti-parallel
Strand 3
B
102 111anti-parallel
Strand 4
B
144 148anti-parallel
Strand 5
B
118 120parallel
Strand 6
B
197 202parallel
Strand 7
B
222 226parallel
Strand 8
B
408 414parallel
Strand 9
B
447 452parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
331 333anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 506first strand
Strand 2
B
509 517anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
523 525first strand
Strand 2
B
537 539anti-parallel
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