Analysis of interatomic Contacts of Structural Units in PDB entry:
3WMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WMW entry

There are 2 chains in PDB entry 3WMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LYS 313
B
 LYS 5LYS 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3WMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
60 69Right-handed alpha
Helix 3
3
A
88 110Right-handed alpha
Helix 4
4
A
121 123Right-handed 310
Helix 5
5
A
142 163Right-handed alpha
Helix 6
6
A
187 199Right-handed alpha
Helix 7
7
A
217 230Right-handed alpha
Helix 8
8
A
231 235Right-handed 310
Helix 9
9
A
249 261Right-handed alpha
Helix 10
10
A
271 279Right-handed alpha
Helix 11
11
A
286 294Right-handed alpha
Helix 12
12
A
300 313Right-handed alpha
Helix 13
13
B
16 30Right-handed alpha
Helix 14
14
B
60 68Right-handed alpha
Helix 15
15
B
88 109Right-handed alpha
Helix 16
16
B
121 123Right-handed 310
Helix 17
17
B
142 163Right-handed alpha
Helix 18
18
B
187 199Right-handed alpha
Helix 19
19
B
217 230Right-handed alpha
Helix 20
20
B
231 235Right-handed 310
Helix 21
21
B
249 261Right-handed alpha
Helix 22
22
B
271 279Right-handed alpha
Helix 23
23
B
286 294Right-handed alpha
Helix 24
24
B
300 313Right-handed alpha
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There are 8 sheets in PDB entry 3WMW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
8 11parallel
Strand 3
A
72 75parallel
Strand 4
A
113 115parallel
Strand 5
A
166 167parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
169 171parallel
Strand 3
A
241 242parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
212 216parallel
Strand 3
A
246 248anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
266 268parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
8 11parallel
Strand 3
B
72 75parallel
Strand 4
B
113 115parallel
Strand 5
B
166 167parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
169 171parallel
Strand 3
B
241 242parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
212 216parallel
Strand 3
B
246 248anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
266 268parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il