Analysis of interatomic Contacts of Structural Units in PDB entry:
3WNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WNB entry

There is 1 chain in PDB entry 3WNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -10LYS 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3WNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 20Right-handed alpha
Helix 2
2
A
53 63Right-handed alpha
Helix 3
3
A
77 90Right-handed alpha
Helix 4
4
A
101 105Right-handed 310
Helix 5
5
A
106 121Right-handed alpha
Helix 6
6
A
146 168Right-handed alpha
Helix 7
7
A
169 171Right-handed 310
Helix 8
8
A
243 247Right-handed 310
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There are 4 sheets in PDB entry 3WNB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
31 35anti-parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
1 8parallel
Strand 5
A
66 71parallel
Strand 6
A
94 99parallel
Strand 7
A
130 133parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
212 221anti-parallel
Strand 3
A
234 240anti-parallel
Strand 4
A
186 196anti-parallel
Strand 5
A
174 183anti-parallel
Strand 6
A
252 254anti-parallel
Strand 7
A
204 208anti-parallel
Strand 8
A
212 221anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
228 230anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
289 300anti-parallel
Strand 3
A
313 326anti-parallel
Strand 4
A
258 269anti-parallel
Strand 5
A
343 349anti-parallel
Strand 6
A
332 335anti-parallel
Strand 7
A
281 286anti-parallel
Strand 8
A
289 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il