Analysis of interatomic Contacts of Structural Units in PDB entry:
3WNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WNM entry

There is 1 chain in PDB entry 3WNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 41HIS 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3WNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
127 129Right-handed 310
Helix 2
2
A
141 145Right-handed 310
Helix 3
3
A
159 175Right-handed alpha
Helix 4
4
A
213 226Right-handed alpha
Helix 5
5
A
243 247Right-handed 310
Helix 6
6
A
249 253Right-handed 310
Helix 7
7
A
282 301Right-handed alpha
Helix 8
8
A
325 328Right-handed 310
Helix 9
9
A
329 345Right-handed alpha
Helix 10
10
A
364 372Right-handed alpha
Helix 11
11
A
387 402Right-handed alpha
Helix 12
12
A
426 428Right-handed 310
Helix 13
13
A
549 564Right-handed alpha
Helix 14
14
A
590 607Right-handed alpha
Helix 15
15
A
607 612Right-handed alpha
Helix 16
16
A
702 706Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 3WNM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
59 67anti-parallel
Strand 3
A
103 111anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 98first strand
Strand 2
A
74 84anti-parallel
Strand 3
A
118 125anti-parallel
Strand 4
A
131 138anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
178 181parallel
Strand 3
A
229 235parallel
Strand 4
A
304 308parallel
Strand 5
A
350 356parallel
Strand 6
A
377 380parallel
Strand 7
A
407 410parallel
Strand 8
A
566 567parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
198 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
210 212anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
274 277anti-parallel
Strand 3
A
265 267anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
323 324anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 424first strand
Strand 2
A
538 546anti-parallel
Strand 3
A
447 451anti-parallel
Strand 4
A
435 436anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 424first strand
Strand 2
A
538 546anti-parallel
Strand 3
A
468 477anti-parallel
Strand 4
A
510 519anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
457 464anti-parallel
Strand 3
A
522 529anti-parallel
Strand 4
A
484 490anti-parallel
Strand 5
A
493 500anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 571first strand
Strand 2
A
575 576anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 618first strand
Strand 2
A
642 648anti-parallel
Strand 3
A
633 634parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 618first strand
Strand 2
A
642 648anti-parallel
Strand 3
A
652 659anti-parallel
Strand 4
A
733 739anti-parallel
Strand 5
A
694 698anti-parallel
Strand 6
A
708 710anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
677 685anti-parallel
Strand 3
A
720 730anti-parallel
Strand 4
A
713 717anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il