Analysis of interatomic Contacts of Structural Units in PDB entry:
3WNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WNV entry

There are 2 chains in PDB entry 3WNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 328
B
 MET 1LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3WNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
23 25Right-handed 310
Helix 3
3
A
35 46Right-handed alpha
Helix 4
4
A
60 65Right-handed alpha
Helix 5
5
A
68 75Right-handed alpha
Helix 6
6
A
93 100Right-handed alpha
Helix 7
7
A
111 128Right-handed alpha
Helix 8
8
A
130 139Right-handed alpha
Helix 9
9
A
163 176Right-handed alpha
Helix 10
10
A
189 194Right-handed alpha
Helix 11
11
A
200 208Right-handed alpha
Helix 12
12
A
226 233Right-handed alpha
Helix 13
13
A
244 248Right-handed 310
Helix 14
14
A
249 259Right-handed alpha
Helix 15
15
A
277 282Right-handed alpha
Helix 16
16
A
296 318Right-handed alpha
Helix 17
17
A
324 328Right-handed 310
Helix 18
18
B
15 22Right-handed alpha
Helix 19
19
B
23 25Right-handed 310
Helix 20
20
B
35 46Right-handed alpha
Helix 21
21
B
60 65Right-handed alpha
Helix 22
22
B
68 75Right-handed alpha
Helix 23
23
B
93 100Right-handed alpha
Helix 24
24
B
111 128Right-handed alpha
Helix 25
25
B
130 139Right-handed alpha
Helix 26
26
B
163 176Right-handed alpha
Helix 27
27
B
189 194Right-handed alpha
Helix 28
28
B
200 208Right-handed alpha
Helix 29
29
B
226 233Right-handed alpha
Helix 30
30
B
244 248Right-handed 310
Helix 31
31
B
249 259Right-handed alpha
Helix 32
32
B
277 282Right-handed alpha
Helix 33
33
B
296 318Right-handed alpha
Helix 34
34
B
324 328Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3WNV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
5 9parallel
Strand 3
A
51 57parallel
Strand 4
A
81 85parallel
Strand 5
A
103 105parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
179 183parallel
Strand 3
A
156 160parallel
Strand 4
A
210 213parallel
Strand 5
A
237 241parallel
Strand 6
A
262 267parallel
Strand 7
A
287 288parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
5 9parallel
Strand 3
B
51 57parallel
Strand 4
B
81 85parallel
Strand 5
B
103 105parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
179 183parallel
Strand 3
B
156 160parallel
Strand 4
B
210 213parallel
Strand 5
B
237 241parallel
Strand 6
B
262 267parallel
Strand 7
B
287 288parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il