Analysis of interatomic Contacts of Structural Units in PDB entry:
3WO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WO4 entry

There are 3 chains in PDB entry 3WO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1ASP 157
B
 GLY -2ASP 318
C
 LEU 30ARG 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3WO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 41Right-handed alpha
Helix 2
2
A
76 80Right-handed 310
Helix 3
3
A
146 150Right-handed 310
Helix 4
4
B
89 93Right-handed 310
Helix 5
5
B
176 180Right-handed 310
Helix 6
6
B
288 292Right-handed 310
Helix 7
7
C
176 179Right-handed 310
Helix 8
8
C
212 216Right-handed 310
Helix 9
9
C
327 332Right-handed 310
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There are 16 sheets in PDB entry 3WO4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
47 54anti-parallel
Strand 5
A
2 13anti-parallel
Strand 6
A
101 106first strand
Strand 7
A
109 117anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
60 67anti-parallel
Strand 5
A
152 155first strand
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
28 31anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
123 130anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
103 112parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
55 59anti-parallel
Strand 5
B
66 67anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
82 85anti-parallel
Strand 3
B
76 79anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
194 207parallel
Strand 3
B
181 191anti-parallel
Strand 4
B
149 156anti-parallel
Strand 5
B
159 160anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
170 174anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
233 241anti-parallel
Strand 3
B
275 284anti-parallel
Strand 4
B
261 263anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
233 241anti-parallel
Strand 3
B
275 284anti-parallel
Strand 4
B
267 271anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 226first strand
Strand 2
B
305 314parallel
Strand 3
B
295 302anti-parallel
Strand 4
B
246 250anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 126first strand
Strand 2
C
141 149anti-parallel
Strand 3
C
32 36parallel
Strand 4
C
233 243parallel
Strand 5
C
162 166parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 126first strand
Strand 2
C
141 149anti-parallel
Strand 3
C
32 36parallel
Strand 4
C
233 243parallel
Strand 5
C
217 224anti-parallel
Strand 6
C
189 193anti-parallel
Strand 7
C
196 197anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 44first strand
Strand 2
C
110 114anti-parallel
Strand 3
C
106 107anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 174first strand
Strand 2
C
205 208anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 255first strand
Strand 2
C
269 278anti-parallel
Strand 3
C
314 323anti-parallel
Strand 4
C
306 310anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 263first strand
Strand 2
C
344 354parallel
Strand 3
C
334 341anti-parallel
Strand 4
C
286 293anti-parallel
Strand 5
C
296 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il