Analysis of interatomic Contacts of Structural Units in PDB entry:
3WOD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WOD entry

There are 8 chains in PDB entry 3WOD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	ALA 230
B	SER 4	ALA 235
C	MET 1	LYS 1118
D	LYS 2	ALA 1505
E	ALA 2	GLU 96
F	LYS 74	GLU 412
G	GLY 4	PHE 138
H	PHE 5	LEU 107

There are117 helices in PDB entry 3WOD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	31	38	Right-handed alpha
Helix 2	2	A	38	47	Right-handed alpha
Helix 3	3	A	74	84	Right-handed alpha
Helix 4	4	A	112	114	Right-handed 310
Helix 5	5	A	152	157	Right-handed alpha
Helix 6	6	A	206	223	Right-handed alpha
Helix 7	7	B	31	47	Right-handed alpha
Helix 8	8	B	74	83	Right-handed alpha
Helix 9	9	B	112	114	Right-handed 310
Helix 10	10	B	152	157	Right-handed alpha
Helix 11	11	B	206	224	Right-handed alpha
Helix 12	12	C	19	30	Right-handed alpha
Helix 13	13	C	43	52	Right-handed alpha
Helix 14	14	C	79	86	Right-handed alpha
Helix 15	15	C	193	201	Right-handed alpha
Helix 16	16	C	203	211	Right-handed alpha
Helix 17	17	C	215	221	Right-handed 310
Helix 18	18	C	230	240	Right-handed alpha
Helix 19	19	C	252	258	Right-handed alpha
Helix 20	20	C	273	281	Right-handed alpha
Helix 21	21	C	302	315	Right-handed alpha
Helix 22	22	C	335	362	Right-handed alpha
Helix 23	23	C	375	389	Right-handed alpha
Helix 24	24	C	399	408	Right-handed alpha
Helix 25	25	C	424	429	Right-handed alpha
Helix 26	26	C	431	435	Right-handed 310
Helix 27	27	C	487	493	Right-handed alpha
Helix 28	28	C	535	540	Right-handed 310
Helix 29	29	C	543	547	Right-handed 310
Helix 30	30	C	549	553	Right-handed 310
Helix 31	31	C	554	567	Right-handed alpha
Helix 32	32	C	582	591	Right-handed alpha
Helix 33	33	C	692	697	Right-handed alpha
Helix 34	34	C	730	735	Right-handed alpha
Helix 35	35	C	767	778	Right-handed alpha
Helix 36	36	C	872	876	Right-handed 310
Helix 37	37	C	882	898	Right-handed alpha
Helix 38	38	C	910	926	Right-handed alpha
Helix 39	39	C	926	933	Right-handed alpha
Helix 40	40	C	937	951	Right-handed alpha
Helix 41	41	C	958	969	Right-handed alpha
Helix 42	42	C	1033	1043	Right-handed alpha
Helix 43	43	C	1045	1053	Right-handed alpha
Helix 44	44	C	1059	1073	Right-handed alpha
Helix 45	45	C	1082	1094	Right-handed alpha
Helix 46	46	D	14	21	Right-handed alpha
Helix 47	47	D	82	89	Right-handed alpha
Helix 48	48	D	101	106	Right-handed alpha
Helix 49	49	D	110	116	Right-handed alpha
Helix 50	50	D	121	130	Right-handed alpha
Helix 51	51	D	154	163	Right-handed alpha
Helix 52	52	D	178	182	Right-handed 310
Helix 53	53	D	457	467	Right-handed alpha
Helix 54	54	D	469	483	Right-handed alpha
Helix 55	55	D	489	504	Right-handed alpha
Helix 56	56	D	508	511	Right-handed 310
Helix 57	57	D	539	560	Right-handed alpha
Helix 58	58	D	563	583	Right-handed alpha
Helix 59	59	D	602	607	Right-handed alpha
Helix 60	60	D	612	620	Right-handed alpha
Helix 61	61	D	646	653	Right-handed alpha
Helix 62	62	D	653	664	Right-handed alpha
Helix 63	63	D	669	678	Right-handed alpha
Helix 64	64	D	679	683	Right-handed 310
Helix 65	65	D	684	696	Right-handed alpha
Helix 66	66	D	709	711	Right-handed 310
Helix 67	67	D	729	734	Right-handed 310
Helix 68	68	D	752	762	Right-handed alpha
Helix 69	69	D	764	768	Right-handed 310
Helix 70	70	D	782	793	Right-handed alpha
Helix 71	71	D	810	822	Right-handed alpha
Helix 72	72	D	835	841	Right-handed alpha
Helix 73	73	D	845	855	Right-handed alpha
Helix 74	74	D	876	890	Right-handed alpha
Helix 75	75	D	892	899	Right-handed alpha
Helix 76	76	D	907	923	Right-handed alpha
Helix 77	77	D	923	946	Right-handed alpha
Helix 78	78	D	958	980	Right-handed alpha
Helix 79	79	D	984	1014	Right-handed alpha
Helix 80	80	D	1018	1026	Right-handed alpha
Helix 81	81	D	1031	1039	Right-handed alpha
Helix 82	82	D	1066	1089	Right-handed alpha
Helix 83	83	D	1092	1103	Right-handed alpha
Helix 84	84	D	1136	1145	Right-handed alpha
Helix 85	85	D	1167	1181	Right-handed alpha
Helix 86	86	D	1190	1194	Right-handed 310
Helix 87	87	D	1202	1206	Right-handed alpha
Helix 88	88	D	1220	1234	Right-handed alpha
Helix 89	89	D	1256	1264	Right-handed alpha
Helix 90	90	D	1331	1340	Right-handed alpha
Helix 91	91	D	1340	1359	Right-handed alpha
Helix 92	92	D	1364	1376	Right-handed alpha
Helix 93	93	D	1395	1404	Right-handed alpha
Helix 94	94	D	1423	1430	Right-handed alpha
Helix 95	95	D	1433	1438	Right-handed alpha
Helix 96	96	D	1442	1453	Right-handed alpha
Helix 97	97	D	1461	1468	Right-handed alpha
Helix 98	98	D	1478	1483	Right-handed alpha
Helix 99	99	D	1489	1497	Right-handed alpha
Helix 100	100	E	5	11	Right-handed alpha
Helix 101	101	E	15	33	Right-handed alpha
Helix 102	102	E	59	70	Right-handed alpha
Helix 103	103	E	81	93	Right-handed alpha
Helix 104	104	F	78	91	Right-handed alpha
Helix 105	105	F	96	121	Right-handed alpha
Helix 106	106	F	123	136	Right-handed alpha
Helix 107	107	F	152	166	Right-handed alpha
Helix 108	108	F	167	200	Right-handed alpha
Helix 109	109	F	201	206	Right-handed 310
Helix 110	110	F	208	227	Right-handed alpha
Helix 111	111	F	234	255	Right-handed alpha
Helix 112	112	F	343	361	Right-handed alpha
Helix 113	113	F	362	375	Right-handed alpha
Helix 114	114	F	393	410	Right-handed alpha
Helix 115	115	G	5	15	Right-handed alpha
Helix 116	116	G	122	133	Right-handed alpha
Helix 117	117	H	6	15	Right-handed alpha

There are 53 sheets in PDB entry 3WOD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	178	first strand
Strand 2	A	193	201	anti-parallel
Strand 3	A	181	183	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	178	first strand
Strand 2	A	193	201	anti-parallel
Strand 3	A	20	28	anti-parallel
Strand 4	A	10	14	anti-parallel
Strand 5	B	230	231	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	104	first strand
Strand 2	A	137	148	anti-parallel
Strand 3	A	49	58	anti-parallel
Strand 4	A	165	166	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	120	122	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	128	132	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	169	170	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	16	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	189	201	anti-parallel
Strand 4	B	174	186	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	103	first strand
Strand 2	B	138	148	anti-parallel
Strand 3	B	49	58	anti-parallel
Strand 4	B	165	166	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	120	122	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	128	131	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	169	170	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	899	902	parallel
Strand 3	C	579	580	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	64	72	anti-parallel
Strand 3	C	95	101	anti-parallel
Strand 4	C	107	108	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	117	119	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	133	136	anti-parallel
Strand 3	C	392	394	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	138	141	anti-parallel
Strand 3	C	410	411	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	158	162	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	182	186	anti-parallel
Strand 3	C	189	190	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	478	486	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	531	532	anti-parallel
Strand 4	C	495	497	parallel
Strand 5	C	513	517	anti-parallel
Strand 6	C	521	524	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	654	657	anti-parallel
Strand 3	C	640	641	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	620	624	first strand
Strand 2	C	610	615	anti-parallel
Strand 3	C	601	606	anti-parallel
Strand 4	C	648	649	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	630	first strand
Strand 2	C	636	637	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	661	662	first strand
Strand 2	C	665	666	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	971	972	first strand
Strand 2	C	987	996	anti-parallel
Strand 3	C	838	841	anti-parallel
Strand 4	C	847	853	anti-parallel
Strand 5	C	688	691	parallel
Strand 6	C	869	870	anti-parallel
Strand 7	C	670	675	parallel
Strand 8	C	987	996	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	713	first strand
Strand 2	C	819	831	anti-parallel
Strand 3	C	799	806	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	722	first strand
Strand 2	C	758	761	anti-parallel
Strand 3	C	785	787	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	754	756	first strand
Strand 2	C	790	791	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1008	first strand
Strand 2	D	626	633	anti-parallel
Strand 3	D	744	748	anti-parallel
Strand 4	D	700	704	anti-parallel
Strand 5	D	713	721	anti-parallel
Strand 6	D	641	645	parallel
Strand 7	D	726	728	anti-parallel
Strand 8	D	626	633	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1097	1102	first strand
Strand 2	D	7	12	anti-parallel
Strand 3	D	1456	1458	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	90	100	parallel
Strand 3	D	513	519	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	133	135	anti-parallel
Strand 3	D	454	455	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	392	396	anti-parallel
Strand 3	D	202	205	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	346	first strand
Strand 2	D	210	214	anti-parallel
Strand 3	D	384	387	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	219	first strand
Strand 2	D	336	339	anti-parallel
Strand 3	D	318	320	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	262	first strand
Strand 2	D	268	272	anti-parallel
Strand 3	D	280	284	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	325	first strand
Strand 2	D	332	333	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	368	369	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	402	first strand
Strand 2	D	443	444	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	415	first strand
Strand 2	D	433	435	anti-parallel
Strand 3	D	446	447	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	529	first strand
Strand 2	D	535	537	anti-parallel
Strand 3	F	315	316	parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	842	843	first strand
Strand 2	D	864	868	parallel
Strand 3	D	871	875	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1107	1109	first strand
Strand 2	D	1200	1201	parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1118	1121	first strand
Strand 2	D	1185	1188	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1147	1148	first strand
Strand 2	D	1165	1166	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1153	1154	first strand
Strand 2	D	1159	1160	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1300	1305	first strand
Strand 2	D	1290	1295	anti-parallel
Strand 3	D	1279	1284	anti-parallel
Strand 4	D	1318	1319	anti-parallel

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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1393	1394	first strand
Strand 2	D	1378	1381	anti-parallel
Strand 3	D	1417	1420	anti-parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1485	1488	first strand
Strand 2	E	73	76	anti-parallel

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There are 6 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	38	39	anti-parallel
Strand 3	G	98	100	parallel
Strand 4	G	80	92	anti-parallel
Strand 5	G	64	75	anti-parallel
Strand 6	G	52	59	anti-parallel

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There are 5 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	38	39	anti-parallel
Strand 3	G	98	100	parallel
Strand 4	G	80	92	anti-parallel
Strand 5	G	105	106	anti-parallel

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There are 5 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	98	100	parallel
Strand 3	H	86	92	anti-parallel
Strand 4	H	64	70	anti-parallel
Strand 5	H	52	59	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	98	100	parallel
Strand 3	H	86	92	anti-parallel
Strand 4	H	105	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WOD

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WOD