Analysis of interatomic Contacts of Structural Units in PDB entry:
3WOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WOE entry

There are 4 chains in PDB entry 3WOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 701LYS 830
B
 VAL 6ASP 109
C
 GLY 701LYS 830
D
 VAL 6ASP 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3WOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
730 735Right-handed alpha
Helix 2
2
A
768 779Right-handed alpha
Helix 3
3
B
7 15Right-handed alpha
Helix 4
4
C
730 735Right-handed alpha
Helix 5
5
C
768 779Right-handed alpha
Helix 6
6
D
7 15Right-handed alpha
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There are 9 sheets in PDB entry 3WOE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 749first strand
Strand 2
A
798 807anti-parallel
Strand 3
A
819 829anti-parallel
Strand 4
A
703 713anti-parallel
Strand 5
D
80 92parallel
Strand 6
D
64 75anti-parallel
Strand 7
D
52 59anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 46first strand
Strand 2
D
38 39anti-parallel
Strand 3
D
98 100parallel
Strand 4
D
80 92anti-parallel
Strand 5
D
105 106anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 722first strand
Strand 2
A
758 761anti-parallel
Strand 3
A
785 787anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 756first strand
Strand 2
A
790 791anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
38 39anti-parallel
Strand 3
B
98 100parallel
Strand 4
B
79 92anti-parallel
Strand 5
B
64 76anti-parallel
Strand 6
B
52 59anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
38 39anti-parallel
Strand 3
B
98 100parallel
Strand 4
B
79 92anti-parallel
Strand 5
B
105 106anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
705 713first strand
Strand 2
C
819 829anti-parallel
Strand 3
C
798 807anti-parallel
Strand 4
C
748 749anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
721 722first strand
Strand 2
C
758 761anti-parallel
Strand 3
C
785 787anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
754 756first strand
Strand 2
C
790 791anti-parallel
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