Analysis of interatomic Contacts of Structural Units in PDB entry:
3WOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WOJ entry

There are 2 chains in PDB entry 3WOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25LYS 722
B
 GLY 25LYS 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 3WOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 36Right-handed 310
Helix 2
2
A
37 45Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
60 62Right-handed 310
Helix 5
5
A
84 95Right-handed alpha
Helix 6
6
A
101 106Right-handed alpha
Helix 7
7
A
111 115Right-handed 310
Helix 8
8
A
133 143Right-handed alpha
Helix 9
9
A
147 168Right-handed alpha
Helix 10
10
A
203 208Right-handed alpha
Helix 11
11
A
211 215Right-handed 310
Helix 12
12
A
281 291Right-handed alpha
Helix 13
13
A
291 314Right-handed alpha
Helix 14
14
A
315 321Right-handed alpha
Helix 15
15
A
321 346Right-handed alpha
Helix 16
16
A
346 364Right-handed alpha
Helix 17
17
A
366 368Right-handed 310
Helix 18
18
A
369 388Right-handed alpha
Helix 19
19
A
389 401Right-handed alpha
Helix 20
20
A
402 418Right-handed alpha
Helix 21
21
A
421 425Right-handed 310
Helix 22
22
A
430 432Right-handed 310
Helix 23
23
A
433 444Right-handed alpha
Helix 24
24
A
445 448Right-handed 310
Helix 25
25
A
449 466Right-handed alpha
Helix 26
26
A
467 472Right-handed 310
Helix 27
27
A
473 481Right-handed alpha
Helix 28
28
A
484 497Right-handed alpha
Helix 29
29
A
502 512Right-handed alpha
Helix 30
30
A
513 520Right-handed alpha
Helix 31
31
A
522 567Right-handed alpha
Helix 32
32
A
603 609Right-handed alpha
Helix 33
33
A
619 628Right-handed alpha
Helix 34
34
A
677 680Right-handed 310
Helix 35
35
A
698 708Right-handed alpha
Helix 36
36
A
711 718Right-handed alpha
Helix 37
37
B
30 36Right-handed 310
Helix 38
38
B
37 45Right-handed alpha
Helix 39
39
B
49 54Right-handed alpha
Helix 40
40
B
60 62Right-handed 310
Helix 41
41
B
84 95Right-handed alpha
Helix 42
42
B
101 106Right-handed alpha
Helix 43
43
B
111 115Right-handed 310
Helix 44
44
B
133 143Right-handed alpha
Helix 45
45
B
147 167Right-handed alpha
Helix 46
46
B
203 208Right-handed alpha
Helix 47
47
B
281 291Right-handed alpha
Helix 48
48
B
291 313Right-handed alpha
Helix 49
49
B
314 321Right-handed alpha
Helix 50
50
B
321 346Right-handed alpha
Helix 51
51
B
346 365Right-handed alpha
Helix 52
52
B
366 368Right-handed 310
Helix 53
53
B
369 389Right-handed alpha
Helix 54
54
B
389 401Right-handed alpha
Helix 55
55
B
402 418Right-handed alpha
Helix 56
56
B
419 420Right-handed 310
Helix 57
57
B
421 425Right-handed 310
Helix 58
58
B
430 432Right-handed 310
Helix 59
59
B
433 444Right-handed alpha
Helix 60
60
B
445 448Right-handed 310
Helix 61
61
B
449 466Right-handed alpha
Helix 62
62
B
467 472Right-handed 310
Helix 63
63
B
473 481Right-handed alpha
Helix 64
64
B
484 497Right-handed alpha
Helix 65
65
B
502 511Right-handed alpha
Helix 66
66
B
513 520Right-handed alpha
Helix 67
67
B
522 567Right-handed alpha
Helix 68
68
B
603 609Right-handed alpha
Helix 69
69
B
619 628Right-handed alpha
Helix 70
70
B
677 684Right-handed 310
Helix 71
71
B
698 708Right-handed alpha
Helix 72
72
B
711 718Right-handed alpha
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There are 9 sheets in PDB entry 3WOJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
80 83anti-parallel
Strand 4
A
226 232anti-parallel
Strand 5
A
195 201anti-parallel
Strand 6
A
116 117anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
226 232anti-parallel
Strand 4
A
246 247anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 132first strand
Strand 2
A
184 193anti-parallel
Strand 3
A
172 179anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 585first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
660 662anti-parallel
Strand 4
A
668 675anti-parallel
Strand 5
A
693 697anti-parallel
Strand 6
A
643 648anti-parallel
Strand 7
A
600 602anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
B
595 597anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
71 74anti-parallel
Strand 3
B
80 83anti-parallel
Strand 4
B
226 232anti-parallel
Strand 5
B
195 201anti-parallel
Strand 6
B
116 117anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
195 201anti-parallel
Strand 3
B
226 232anti-parallel
Strand 4
B
246 247anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 132first strand
Strand 2
B
184 193anti-parallel
Strand 3
B
172 179anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 585first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
660 662anti-parallel
Strand 4
B
668 675anti-parallel
Strand 5
B
693 697anti-parallel
Strand 6
B
643 648anti-parallel
Strand 7
B
600 602anti-parallel
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