Analysis of interatomic Contacts of Structural Units in PDB entry:
3WOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WOK entry

There are 2 chains in PDB entry 3WOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25LYS 722
B
 GLY 25LYS 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 3WOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 36Right-handed 310
Helix 2
2
A
37 45Right-handed alpha
Helix 3
3
A
49 54Right-handed alpha
Helix 4
4
A
60 62Right-handed 310
Helix 5
5
A
84 95Right-handed alpha
Helix 6
6
A
101 106Right-handed alpha
Helix 7
7
A
111 115Right-handed 310
Helix 8
8
A
133 143Right-handed alpha
Helix 9
9
A
147 167Right-handed alpha
Helix 10
10
A
203 208Right-handed alpha
Helix 11
11
A
281 291Right-handed alpha
Helix 12
12
A
291 312Right-handed alpha
Helix 13
13
A
315 346Right-handed alpha
Helix 14
14
A
346 364Right-handed alpha
Helix 15
15
A
366 368Right-handed 310
Helix 16
16
A
369 389Right-handed alpha
Helix 17
17
A
389 400Right-handed alpha
Helix 18
18
A
402 419Right-handed alpha
Helix 19
19
A
420 425Right-handed 310
Helix 20
20
A
430 432Right-handed 310
Helix 21
21
A
433 445Right-handed alpha
Helix 22
22
A
446 448Right-handed 310
Helix 23
23
A
449 466Right-handed alpha
Helix 24
24
A
467 472Right-handed 310
Helix 25
25
A
473 481Right-handed alpha
Helix 26
26
A
484 497Right-handed alpha
Helix 27
27
A
502 512Right-handed alpha
Helix 28
28
A
513 520Right-handed alpha
Helix 29
29
A
522 567Right-handed alpha
Helix 30
30
A
603 609Right-handed alpha
Helix 31
31
A
619 628Right-handed alpha
Helix 32
32
A
677 680Right-handed 310
Helix 33
33
A
698 708Right-handed alpha
Helix 34
34
A
711 718Right-handed alpha
Helix 35
35
B
30 36Right-handed 310
Helix 36
36
B
37 45Right-handed alpha
Helix 37
37
B
49 55Right-handed alpha
Helix 38
38
B
60 62Right-handed 310
Helix 39
39
B
84 95Right-handed alpha
Helix 40
40
B
101 106Right-handed alpha
Helix 41
41
B
111 115Right-handed 310
Helix 42
42
B
133 143Right-handed alpha
Helix 43
43
B
147 167Right-handed alpha
Helix 44
44
B
203 208Right-handed alpha
Helix 45
45
B
281 291Right-handed alpha
Helix 46
46
B
291 313Right-handed alpha
Helix 47
47
B
314 321Right-handed alpha
Helix 48
48
B
321 345Right-handed alpha
Helix 49
49
B
346 365Right-handed alpha
Helix 50
50
B
366 368Right-handed 310
Helix 51
51
B
369 389Right-handed alpha
Helix 52
52
B
389 401Right-handed alpha
Helix 53
53
B
402 419Right-handed alpha
Helix 54
54
B
420 425Right-handed 310
Helix 55
55
B
430 432Right-handed 310
Helix 56
56
B
433 444Right-handed alpha
Helix 57
57
B
445 448Right-handed 310
Helix 58
58
B
449 466Right-handed alpha
Helix 59
59
B
467 472Right-handed 310
Helix 60
60
B
473 481Right-handed alpha
Helix 61
61
B
484 497Right-handed alpha
Helix 62
62
B
502 511Right-handed alpha
Helix 63
63
B
513 520Right-handed alpha
Helix 64
64
B
522 567Right-handed alpha
Helix 65
65
B
603 609Right-handed alpha
Helix 66
66
B
619 628Right-handed alpha
Helix 67
67
B
680 684Right-handed 310
Helix 68
68
B
698 708Right-handed alpha
Helix 69
69
B
711 718Right-handed alpha
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There are 9 sheets in PDB entry 3WOK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
80 83anti-parallel
Strand 4
A
226 232anti-parallel
Strand 5
A
195 201anti-parallel
Strand 6
A
116 117anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
226 232anti-parallel
Strand 4
A
246 247anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 132first strand
Strand 2
A
184 193anti-parallel
Strand 3
A
172 179anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 585first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
660 662anti-parallel
Strand 4
A
668 675anti-parallel
Strand 5
A
693 697anti-parallel
Strand 6
A
643 648anti-parallel
Strand 7
A
600 602anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
B
595 597anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
71 74anti-parallel
Strand 3
B
80 83anti-parallel
Strand 4
B
226 232anti-parallel
Strand 5
B
195 201anti-parallel
Strand 6
B
116 117anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
195 201anti-parallel
Strand 3
B
226 232anti-parallel
Strand 4
B
246 247anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 132first strand
Strand 2
B
184 193anti-parallel
Strand 3
B
172 179anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 585first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
660 662anti-parallel
Strand 4
B
668 675anti-parallel
Strand 5
B
693 697anti-parallel
Strand 6
B
643 648anti-parallel
Strand 7
B
600 602anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il