Analysis of interatomic Contacts of Structural Units in PDB entry:
3WOR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WOR entry

There are 4 chains in PDB entry 3WOR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 25	GLY 721
B	GLY 25	GLY 721
C	ASP 1	HIS 6
D	ASP 1	HIS 6

There are 75 helices in PDB entry 3WOR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	30	32	Right-handed 310
Helix 2	2	A	33	45	Right-handed alpha
Helix 3	3	A	49	55	Right-handed alpha
Helix 4	4	A	60	62	Right-handed 310
Helix 5	5	A	84	95	Right-handed alpha
Helix 6	6	A	101	106	Right-handed alpha
Helix 7	7	A	111	115	Right-handed 310
Helix 8	8	A	133	143	Right-handed alpha
Helix 9	9	A	147	167	Right-handed alpha
Helix 10	10	A	180	183	Right-handed 310
Helix 11	11	A	203	208	Right-handed alpha
Helix 12	12	A	210	215	Right-handed alpha
Helix 13	13	A	281	291	Right-handed alpha
Helix 14	14	A	291	313	Right-handed alpha
Helix 15	15	A	314	321	Right-handed alpha
Helix 16	16	A	321	345	Right-handed alpha
Helix 17	17	A	346	364	Right-handed alpha
Helix 18	18	A	365	368	Right-handed 310
Helix 19	19	A	369	388	Right-handed alpha
Helix 20	20	A	389	400	Right-handed alpha
Helix 21	21	A	402	418	Right-handed alpha
Helix 22	22	A	419	420	Right-handed 310
Helix 23	23	A	421	425	Right-handed 310
Helix 24	24	A	430	432	Right-handed 310
Helix 25	25	A	433	444	Right-handed alpha
Helix 26	26	A	445	448	Right-handed 310
Helix 27	27	A	449	466	Right-handed alpha
Helix 28	28	A	467	472	Right-handed 310
Helix 29	29	A	473	481	Right-handed alpha
Helix 30	30	A	484	496	Right-handed alpha
Helix 31	31	A	502	511	Right-handed alpha
Helix 32	32	A	513	520	Right-handed alpha
Helix 33	33	A	522	567	Right-handed alpha
Helix 34	34	A	603	609	Right-handed alpha
Helix 35	35	A	619	628	Right-handed alpha
Helix 36	36	A	677	684	Right-handed 310
Helix 37	37	A	687	691	Right-handed 310
Helix 38	38	A	698	708	Right-handed alpha
Helix 39	39	A	711	718	Right-handed alpha
Helix 40	40	B	30	32	Right-handed 310
Helix 41	41	B	33	45	Right-handed alpha
Helix 42	42	B	49	55	Right-handed alpha
Helix 43	43	B	60	62	Right-handed 310
Helix 44	44	B	84	95	Right-handed alpha
Helix 45	45	B	101	106	Right-handed alpha
Helix 46	46	B	111	115	Right-handed 310
Helix 47	47	B	133	143	Right-handed alpha
Helix 48	48	B	147	167	Right-handed alpha
Helix 49	49	B	203	208	Right-handed alpha
Helix 50	50	B	210	215	Right-handed alpha
Helix 51	51	B	281	291	Right-handed alpha
Helix 52	52	B	291	313	Right-handed alpha
Helix 53	53	B	314	321	Right-handed alpha
Helix 54	54	B	321	346	Right-handed alpha
Helix 55	55	B	346	364	Right-handed alpha
Helix 56	56	B	365	368	Right-handed 310
Helix 57	57	B	369	389	Right-handed alpha
Helix 58	58	B	389	400	Right-handed alpha
Helix 59	59	B	402	419	Right-handed alpha
Helix 60	60	B	420	425	Right-handed 310
Helix 61	61	B	430	432	Right-handed 310
Helix 62	62	B	433	444	Right-handed alpha
Helix 63	63	B	445	448	Right-handed 310
Helix 64	64	B	449	466	Right-handed alpha
Helix 65	65	B	468	472	Right-handed 310
Helix 66	66	B	473	481	Right-handed alpha
Helix 67	67	B	484	496	Right-handed alpha
Helix 68	68	B	502	512	Right-handed alpha
Helix 69	69	B	513	520	Right-handed alpha
Helix 70	70	B	522	567	Right-handed alpha
Helix 71	71	B	603	609	Right-handed alpha
Helix 72	72	B	619	628	Right-handed alpha
Helix 73	73	B	677	684	Right-handed 310
Helix 74	74	B	698	708	Right-handed alpha
Helix 75	75	B	711	718	Right-handed alpha

There are 9 sheets in PDB entry 3WOR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	71	74	anti-parallel
Strand 3	A	80	83	anti-parallel
Strand 4	A	226	232	anti-parallel
Strand 5	A	195	201	anti-parallel
Strand 6	A	116	117	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	246	247	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	132	first strand
Strand 2	A	184	193	anti-parallel
Strand 3	A	172	179	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	585	first strand
Strand 2	A	266	271	anti-parallel
Strand 3	A	660	662	anti-parallel
Strand 4	A	668	675	anti-parallel
Strand 5	A	693	697	anti-parallel
Strand 6	A	643	648	anti-parallel
Strand 7	A	600	602	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	B	595	597	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	226	232	anti-parallel
Strand 5	B	195	201	anti-parallel
Strand 6	B	116	117	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	195	201	anti-parallel
Strand 3	B	226	232	anti-parallel
Strand 4	B	246	247	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	132	first strand
Strand 2	B	184	193	anti-parallel
Strand 3	B	172	179	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	585	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	660	662	anti-parallel
Strand 4	B	668	675	anti-parallel
Strand 5	B	693	697	anti-parallel
Strand 6	B	643	648	anti-parallel
Strand 7	B	600	602	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WOR

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WOR