Analysis of interatomic Contacts of Structural Units in PDB entry:
3WP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WP3 entry

There are 2 chains in PDB entry 3WP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34SER 223
B
 GLN 34SER 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 3WP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
185 195Right-handed alpha
Helix 2
2
B
185 194Right-handed alpha
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There are 4 sheets in PDB entry 3WP3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
78 85anti-parallel
Strand 4
A
201 212anti-parallel
Strand 5
A
104 114anti-parallel
Strand 6
A
118 126anti-parallel
Strand 7
A
165 174parallel
Strand 8
A
146 158anti-parallel
Strand 9
A
136 143anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
216 223anti-parallel
Strand 4
A
92 101anti-parallel
Strand 5
A
181 184anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
47 53anti-parallel
Strand 3
B
78 85anti-parallel
Strand 4
B
201 212anti-parallel
Strand 5
B
104 114anti-parallel
Strand 6
B
118 126anti-parallel
Strand 7
B
165 174parallel
Strand 8
B
146 158anti-parallel
Strand 9
B
139 143anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
68 74anti-parallel
Strand 3
B
216 223anti-parallel
Strand 4
B
92 101anti-parallel
Strand 5
B
181 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il