Analysis of interatomic Contacts of Structural Units in PDB entry:
3WP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WP5 entry

There is 1 chain in PDB entry 3WP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -2ASP 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3WP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
71 76Right-handed alpha
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
177 187Right-handed alpha
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There are 2 sheets in PDB entry 3WP5. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
210 223anti-parallel
Strand 5
A
78 90anti-parallel
Strand 6
A
172 176anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
57 65anti-parallel
Strand 4
A
193 204anti-parallel
Strand 5
A
94 104anti-parallel
Strand 6
A
108 115anti-parallel
Strand 7
A
157 166parallel
Strand 8
A
139 150anti-parallel
Strand 9
A
129 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il