Analysis of interatomic Contacts of Structural Units in PDB entry:
3WP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WP8 entry

There is 1 chain in PDB entry 3WP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2882LYS 3198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3WP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2882 2912Right-handed alpha
Helix 2
2
A
2924 2929Right-handed alpha
Helix 3
3
A
2957 2969Right-handed alpha
Helix 4
4
A
3121 3131Right-handed alpha
Helix 5
5
A
3142 3146Right-handed 310
Helix 6
6
A
3165 3198Right-handed alpha
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There are 4 sheets in PDB entry 3WP8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2913 2915first strand
Strand 2
A
2921 2923anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2943 2945first strand
Strand 2
A
2952 2954anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2991 2992first strand
Strand 2
A
3005 3006parallel
Strand 3
A
3021 3022parallel
Strand 4
A
3035 3036parallel
Strand 5
A
3049 3050parallel
Strand 6
A
3063 3064parallel
Strand 7
A
3077 3078parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2998 3000first strand
Strand 2
A
3014 3016parallel
Strand 3
A
3028 3030parallel
Strand 4
A
3042 3046parallel
Strand 5
A
3056 3060parallel
Strand 6
A
3070 3072parallel
Strand 7
A
3084 3086parallel
Strand 8
A
3098 3100parallel
Strand 9
A
3138 3139parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il