Analysis of interatomic Contacts of Structural Units in PDB entry:
3WPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WPA entry

There is 1 chain in PDB entry 3WPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3205ILE 3550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3WPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3213 3232Right-handed alpha
Helix 2
2
A
3329 3351Right-handed alpha
Helix 3
3
A
3390 3418Right-handed alpha
Helix 4
4
A
3471 3487Right-handed alpha
Helix 5
5
A
3513 3545Right-handed alpha
Helix 6
6
A
3546 3549Right-handed 310
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There are 5 sheets in PDB entry 3WPA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3242 3248first strand
Strand 2
A
3254 3260anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3268 3271first strand
Strand 2
A
3274 3277anti-parallel
Strand 3
A
3280 3283anti-parallel
Strand 4
A
3288 3291anti-parallel
Strand 5
A
3294 3297anti-parallel
Strand 6
A
3302 3304anti-parallel
Strand 7
A
3307 3309anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3423 3425first strand
Strand 2
A
3432 3434anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3491 3493first strand
Strand 2
A
3498 3500anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3504 3506first strand
Strand 2
A
3509 3511anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il