Analysis of interatomic Contacts of Structural Units in PDB entry:
3WPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WPB entry

There is 1 chain in PDB entry 3WPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 28LEU 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3WPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 65Right-handed 310
Helix 2
2
A
236 241Right-handed 310
Helix 3
3
A
300 305Right-handed 310
Helix 4
4
A
322 326Right-handed 310
Helix 5
5
A
357 363Right-handed 310
Helix 6
6
A
384 388Right-handed 310
Helix 7
7
A
408 412Right-handed 310
Helix 8
8
A
488 493Right-handed 310
Helix 9
9
A
567 572Right-handed 310
Helix 10
10
A
609 616Right-handed alpha
Helix 11
11
A
644 649Right-handed alpha
Helix 12
12
A
669 676Right-handed 310
Helix 13
13
A
741 746Right-handed 310
Helix 14
14
A
748 752Right-handed 310
Helix 15
15
A
769 777Right-handed alpha
Helix 16
16
A
778 781Right-handed 310
Helix 17
17
A
783 788Right-handed alpha
Helix 18
18
A
793 797Right-handed 310
Helix 19
19
A
803 808Right-handed alpha
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There are 7 sheets in PDB entry 3WPB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 28 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
67 69parallel
Strand 4
A
91 93parallel
Strand 5
A
127 129parallel
Strand 6
A
147 149parallel
Strand 7
A
171 173parallel
Strand 8
A
203 205parallel
Strand 9
A
224 226parallel
Strand 10
A
248 250parallel
Strand 11
A
288 290parallel
Strand 12
A
312 314parallel
Strand 13
A
338 340parallel
Strand 14
A
368 370parallel
Strand 15
A
395 397parallel
Strand 16
A
419 421parallel
Strand 17
A
476 478parallel
Strand 18
A
500 502parallel
Strand 19
A
525 527parallel
Strand 20
A
549 551parallel
Strand 21
A
579 581parallel
Strand 22
A
602 604parallel
Strand 23
A
632 634parallel
Strand 24
A
657 659parallel
Strand 25
A
681 683parallel
Strand 26
A
705 707parallel
Strand 27
A
729 731parallel
Strand 28
A
754 756parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
113 114parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
189 190parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
274 275parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
405 406parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
626 627parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
691 692first strand
Strand 2
A
715 716parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il